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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2i8c ADP D-alanine--D-alanine ligase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2i8c ADPD-alanine--D-alanine ligase / 0.911
3q1k ADPD-alanine--D-alanine ligase A 6.3.2.4 0.769
3wnz ADPAlanine--anticapsin ligase / 0.701
3g8d ADPBiotin carboxylase 6.3.4.14 0.692
3eth ATPN5-carboxyaminoimidazole ribonucleotide synthase / 0.689
2yeg XQGHeat shock protein HSP 90-alpha / 0.682
3r5f ATPD-alanine--D-alanine ligase / 0.680
4ffl ADPUncharacterized protein / 0.680
2w4k ADPDeath-associated protein kinase 1 2.7.11.1 0.674
4eom ATPCyclin-dependent kinase 2 2.7.11.22 0.673
3i12 ADPD-alanine--D-alanine ligase A 6.3.2.4 0.662
3vpb ADPGlutamate--LysW ligase ArgX 6.3.2 0.662
3b2t M33Fibroblast growth factor receptor 2 / 0.660
3pdt ADPMyosin heavy chain kinase A 2.7.11.7 0.657
4zs4 ATPMyosin heavy chain kinase A 2.7.11.7 0.657
2w4j ADPDeath-associated protein kinase 1 2.7.11.1 0.655
2zdg ADPD-alanine--D-alanine ligase / 0.653
4cki ADNProto-oncogene tyrosine-protein kinase receptor Ret 2.7.10.1 0.653
2qo9 ANPEphrin type-A receptor 3 2.7.10.1 0.652
4ckj ADNProto-oncogene tyrosine-protein kinase receptor Ret 2.7.10.1 0.650