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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2i6a 5I5 Adenosine kinase 2.7.1.20

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2i6a 5I5Adenosine kinase 2.7.1.20 1.046
3uq9 TBNPutative adenosine kinase / 0.793
3otx AP5Adenosine kinase, putative / 0.780
4dc3 2FAPutative adenosine kinase / 0.756
3vas ADNPutative adenosine kinase / 0.708
3vaq ADNPutative adenosine kinase / 0.701
3uq6 ADNPutative adenosine kinase / 0.694
4o8j ADNRNA 3'-terminal phosphate cyclase 6.5.1.4 0.685
5aqz SGVHeat shock 70 kDa protein 1A / 0.664
2qwl ADPHeat shock cognate 71 kDa protein / 0.651