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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2i4n 5CA Proline--tRNA ligase 6.1.1.15

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2i4n 5CAProline--tRNA ligase 6.1.1.15 1.069
4xeo A5AAlanine--tRNA ligase, cytoplasmic / 0.736
1nj5 P5AProline--tRNA ligase / 0.734
1nj6 A5AProline--tRNA ligase / 0.717
4bw9 ANPPyrrolysine--tRNA ligase / 0.683
3e9h KAALysine--tRNA ligase 6.1.1.6 0.677
3a5z KAAElongation factor P--(R)-beta-lysine ligase / 0.668
2aly YSAPhenylalanine--tRNA ligase alpha subunit 6.1.1.20 0.660