Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2i19 1BY Farnesyl pyrophosphate synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2i19 1BYFarnesyl pyrophosphate synthase / 0.922
4kqs RISFarnesyl pyrophosphate synthase 2.5.1.10 0.788
4q23 RISFarnesyl pyrophosphate synthase 2.5.1.10 0.776
4h5e YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.750
4h5d YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.748
3ldw ZOLFarnesyl pyrophosphate synthase, putative / 0.741
4nke RISFarnesyl pyrophosphate synthase 2.5.1.10 0.741
3rbm B73Farnesyl pyrophosphate synthase, putative / 0.739
2f94 BFQFarnesyl pyrophosphate synthase 2.5.1.10 0.733
2e8w IPEGeranylgeranyl pyrophosphate synthase / 0.725
4dxj 0M9Farnesyl pyrophosphate synthase / 0.709
4lfv YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.709
4dwb 0M7Farnesyl pyrophosphate synthase / 0.706
4ga3 4GAFarnesyl pyrophosphate synthase 2.5.1.10 0.703
3rye UNRFarnesyl pyrophosphate synthase 2.5.1.10 0.689
2z52 H23Geranylgeranyl pyrophosphate synthase / 0.688
2z4w 749Geranylgeranyl pyrophosphate synthase / 0.678
3ez3 ZOLFarnesyl pyrophosphate synthase, putative / 0.677
3krf DSTGeranyl diphosphate synthase large subunit / 0.672
3ryw K9HFarnesyl pyrophosphate synthase, putative / 0.666
1rqj RISFarnesyl diphosphate synthase 2.5.1.10 0.663
1yv5 RISFarnesyl pyrophosphate synthase 2.5.1.10 0.659
4ffl ADPUncharacterized protein / 0.651