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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2hsd NAD 3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2hsd NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.973
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.765
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.748
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.741
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.738
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.735
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.731
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.729
4yai NAIC alpha-dehydrogenase / 0.725
4yag NAIC alpha-dehydrogenase / 0.724
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.720
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.710
1zem NADXylitol dehydrogenase / 0.709
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.708
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.707
3sx2 NADUncharacterized protein / 0.706
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.705
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.705
4qec NAPElxO / 0.701
4qed NAPElxO / 0.700
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.699
3sju NDPKeto reductase / 0.698
3tsc NADUncharacterized protein / 0.698
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.696
2hun NAD336aa long hypothetical dTDP-glucose 4,6-dehydratase / 0.696
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.694
3s55 NADPutative short-chain dehydrogenase/reductase / 0.694
2jah NDPClavaldehyde dehydrogenase / 0.693
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.693
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.693
3wds NADNADH-dependent quinuclidinone reductase / 0.692
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.691
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.690
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.690
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.690
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.690
3o26 NDPSalutaridine reductase / 0.688
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.688
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.687
1iy8 NADLevodione reductase / 0.686
3ak4 NADNADH-dependent quinuclidinone reductase / 0.683
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.683
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.682
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.682
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.680
5jla NADPutative short-chain dehydrogenase/reductase / 0.680
3p19 NDPPutative blue fluorescent protein / 0.679
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.678
1pr9 NAPL-xylulose reductase 1.1.1.10 0.674
1orr NADCDP-paratose 2-epimerase / 0.673
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.670
3rue NADUDP-N-acetylglucosamine 4-epimerase / 0.670
3tn7 NJPShort-chain alcohol dehydrogenase / 0.670
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.669
4dbz NDPPutative ketoacyl reductase 1.3.1 0.669
1bxk NADdTDP-glucose 4,6-dehydratase 2 / 0.667
1n7g NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.667
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.667
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.667
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.666
3ko8 NADNAD-dependent epimerase/dehydratase / 0.666
1i3l NADUDP-glucose 4-epimerase / 0.665
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.664
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.664
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.664
1g1a NADdTDP-glucose 4,6-dehydratase / 0.663
4o29 SAHProtein-L-isoaspartate O-methyltransferase / 0.662
3qrw NDPPutative ketoacyl reductase 1.3.1 0.661
4yac NAIC alpha-dehydrogenase / 0.660
3a1n NADNDP-sugar epimerase / 0.659
2dte NAIGlucose 1-dehydrogenase related protein / 0.658
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.658
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.658
4wec NADShort chain dehydrogenase / 0.657
2p5y NADUDP-glucose 4-epimerase / 0.656
1x7h NDPPutative ketoacyl reductase 1.3.1 0.655
3l77 NJPShort-chain alcohol dehydrogenase / 0.655
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.653
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.653
4y9d NAIC alpha-dehydrogenase / 0.653
2wsb NADGalactitol dehydrogenase / 0.652
3icp NADNAD-dependent epimerase/dehydratase / 0.652
1fk8 NAD3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase 1.1.1.50 0.651
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.651
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.651
4fw8 NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.651
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.650