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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2hcd BIV Vitamin D3 receptor A

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2hcd BIVVitamin D3 receptor A / 1.627
4ia7 BIVVitamin D3 receptor A / 1.409
4ia2 BIVVitamin D3 receptor A / 1.345
4ia3 BIVVitamin D3 receptor A / 1.335
2hbh XE4Vitamin D3 receptor A / 1.149
3kpz ZNEVitamin D3 receptor / 1.137
2hc4 VDXVitamin D3 receptor A / 1.132
4ia1 BIVVitamin D3 receptor A / 1.124
1s0z EB1Vitamin D3 receptor / 1.060
1db1 VDXVitamin D3 receptor / 1.058
1rk3 VDXVitamin D3 receptor / 1.055
1ie8 KH1Vitamin D3 receptor / 1.050
2ham C33Vitamin D3 receptor / 1.050
2hb8 MVDVitamin D3 receptor / 1.042
4ruj VDXVitamin D3 receptor A / 1.036
2has C3OVitamin D3 receptor / 1.028
4ruo BIVVitamin D3 receptor A / 1.023
1s19 MC9Vitamin D3 receptor / 1.016
1ie9 VDXVitamin D3 receptor / 1.010
2har OCCVitamin D3 receptor / 1.003
3dr1 C5DVitamin D3 receptor A / 0.991
4ite TEYVitamin D3 receptor / 0.976
3vtc TK3Vitamin D3 receptor / 0.971
3m7r VDXVitamin D3 receptor / 0.968
1txi TX5Vitamin D3 receptor / 0.967
1rkh VD2Vitamin D3 receptor / 0.961
3vt3 VDXVitamin D3 receptor / 0.950
2zlc VDXVitamin D3 receptor / 0.947
3a78 3EVVitamin D3 receptor / 0.941
2hb7 O1CVitamin D3 receptor / 0.932
3vt7 VDXVitamin D3 receptor / 0.918
4itf TFYVitamin D3 receptor / 0.896
1rkg VD1Vitamin D3 receptor / 0.884
3vtb TKAVitamin D3 receptor / 0.872
2o4j VD4Vitamin D3 receptor / 0.854
3vt8 YI3Vitamin D3 receptor / 0.838
1rjk VDZVitamin D3 receptor / 0.829
3vrv YSDVitamin D3 receptor / 0.816
2o4r VD5Vitamin D3 receptor / 0.791
4rup H97Vitamin D3 receptor A / 0.782
3vt5 YI2Vitamin D3 receptor / 0.772
3vrt YS2Vitamin D3 receptor / 0.766
3vru YS3Vitamin D3 receptor / 0.762
3w5t LHPVitamin D3 receptor / 0.676
3w0j T08Vitamin D3 receptor / 0.660
3w5r LOAVitamin D3 receptor / 0.656
3up3 XCAaceDAF-12 / 0.650