Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2hbh XE4 Vitamin D3 receptor A

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2hbh XE4Vitamin D3 receptor A / 1.443
2hc4 VDXVitamin D3 receptor A / 1.202
4ia7 BIVVitamin D3 receptor A / 1.175
2hcd BIVVitamin D3 receptor A / 1.149
4ia2 BIVVitamin D3 receptor A / 1.146
4ia3 BIVVitamin D3 receptor A / 1.141
1ie8 KH1Vitamin D3 receptor / 1.130
2hb7 O1CVitamin D3 receptor / 1.084
4rup H97Vitamin D3 receptor A / 1.064
1s0z EB1Vitamin D3 receptor / 1.063
3dr1 C5DVitamin D3 receptor A / 1.058
1ie9 VDXVitamin D3 receptor / 1.055
2hb8 MVDVitamin D3 receptor / 1.055
4ruj VDXVitamin D3 receptor A / 1.055
4ia1 BIVVitamin D3 receptor A / 1.042
4ruo BIVVitamin D3 receptor A / 1.042
2har OCCVitamin D3 receptor / 1.033
3kpz ZNEVitamin D3 receptor / 1.021
1rjk VDZVitamin D3 receptor / 1.016
1s19 MC9Vitamin D3 receptor / 1.016
4ite TEYVitamin D3 receptor / 1.012
1rk3 VDXVitamin D3 receptor / 1.008
3vtc TK3Vitamin D3 receptor / 1.006
2zlc VDXVitamin D3 receptor / 1.003
1rkh VD2Vitamin D3 receptor / 0.994
3a78 3EVVitamin D3 receptor / 0.984
2ham C33Vitamin D3 receptor / 0.982
4itf TFYVitamin D3 receptor / 0.978
3m7r VDXVitamin D3 receptor / 0.964
2has C3OVitamin D3 receptor / 0.960
1rkg VD1Vitamin D3 receptor / 0.953
2o4j VD4Vitamin D3 receptor / 0.950
3vtd TKDVitamin D3 receptor / 0.943
3vtb TKAVitamin D3 receptor / 0.929
3vt7 VDXVitamin D3 receptor / 0.924
3vt3 VDXVitamin D3 receptor / 0.922
3vrt YS2Vitamin D3 receptor / 0.906
2zla VDBVitamin D3 receptor / 0.842
1txi TX5Vitamin D3 receptor / 0.840
3vrw YS5Vitamin D3 receptor / 0.808
4g2h 0VQVitamin D3 receptor A / 0.796
3vru YS3Vitamin D3 receptor / 0.757
2o4r VD5Vitamin D3 receptor / 0.744
2zl9 VDAVitamin D3 receptor / 0.738
3w0a DS5Vitamin D3 receptor / 0.735
4fhi 0S4Vitamin D3 receptor A / 0.692
3w0j T08Vitamin D3 receptor / 0.689
3vt6 5YIVitamin D3 receptor / 0.684
3vrv YSDVitamin D3 receptor / 0.682
3vt5 YI2Vitamin D3 receptor / 0.667
1s0x C3SNuclear receptor ROR-alpha / 0.662
4g1d 0VKVitamin D3 receptor A / 0.655
1pqc 444Oxysterols receptor LXR-beta / 0.650