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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2h39 ADQ ADP-glucose phosphorylase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2h39 ADQADP-glucose phosphorylase / 1.378
3n1s 5GPPurine nucleoside phosphoramidase / 0.715
4egu 5GPPutative histidine triad (HIT) protein / 0.713
4eqg A5AHistidine triad nucleotide-binding protein 1 3 0.713
2ji6 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.695
4fzv SAM5-methylcytosine rRNA methyltransferase NSUN4 2.1.1 0.692
5i2f BS5Histidine triad nucleotide-binding protein 1 3 0.690
4nec SAHPutative SAM-dependent methyltransferase / 0.687
2g1p SAHDNA adenine methylase 2.1.1.72 0.686
3ou6 SAMSAM-dependent methyltransferase / 0.683
2q28 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.674
3duw SAHO-methyltransferase, putative / 0.673
5dxa SFGHistone-arginine methyltransferase CARM1 / 0.673
1rzy 5ASHistidine triad nucleotide-binding protein 1 3 0.670
4ku7 PCGcGMP-dependent protein kinase 1 2.7.11.12 0.667
3u81 SAHCatechol O-methyltransferase 2.1.1.6 0.665
4pyn SAHCatechol O-methyltransferase 2.1.1.6 0.665
1z7e UGABifunctional polymyxin resistance protein ArnA / 0.662
4eqe KAAHistidine triad nucleotide-binding protein 1 3 0.660
3rfa SAMDual-specificity RNA methyltransferase RlmN / 0.659
5ccx SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.656
3v8v SAMRibosomal RNA large subunit methyltransferase K/L 2.1.1.173 0.655
1g1a NADdTDP-glucose 4,6-dehydratase / 0.654
5il1 SAMN6-adenosine-methyltransferase 70 kDa subunit / 0.653
4f6r GDPTubulin beta chain / 0.651
2ji7 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.650