Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2h2a DND Probable nicotinate-nucleotide adenylyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2h2a DNDProbable nicotinate-nucleotide adenylyltransferase / 1.476
2h29 DNDProbable nicotinate-nucleotide adenylyltransferase / 1.136
2qtr NXXProbable nicotinate-nucleotide adenylyltransferase / 0.976
4wso NADProbable nicotinate-nucleotide adenylyltransferase / 0.964
1k4m NADNicotinate-nucleotide adenylyltransferase 2.7.7.18 0.788
1nuu NADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3 / 0.741
2yy5 WSATryptophan--tRNA ligase 6.1.1.2 0.680
1nuq NXXNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3 / 0.678
1n1d C2GGlycerol-3-phosphate cytidylyltransferase 2.7.7.39 0.676
5bsf NADPyrroline-5-carboxylate reductase / 0.668
3a0t ADPSensor histidine kinase / 0.667
4s32 ANPMitogen-activated protein kinase 1 2.7.11.24 0.656
1jed ADPSulfate adenylyltransferase / 0.650
5a04 NDPGlucose-fructose oxidoreductase / 0.650