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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2h29 DND Probable nicotinate-nucleotide adenylyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2h29 DNDProbable nicotinate-nucleotide adenylyltransferase / 1.312
2h2a DNDProbable nicotinate-nucleotide adenylyltransferase / 1.136
2qtr NXXProbable nicotinate-nucleotide adenylyltransferase / 0.926
1k4m NADNicotinate-nucleotide adenylyltransferase 2.7.7.18 0.789
4wso NADProbable nicotinate-nucleotide adenylyltransferase / 0.778
2voj NADAlanine dehydrogenase 1.4.1.1 0.660
3coy 53HPantothenate synthetase 6.3.2.1 0.657
1s20 NAD2,3-diketo-L-gulonate reductase 1.1.1.130 0.652