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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2gyw OBI Acetylcholinesterase 3.1.1.7

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1n35 CH1RNA-directed RNA polymerase lambda-3 2.7.7.48 0.744
1n38 U3HRNA-directed RNA polymerase lambda-3 2.7.7.48 0.744
1xxj UNCUricase 1.7.3.3 0.744
2cgw 3C3Serine/threonine-protein kinase Chk1 2.7.11.1 0.744
2d09 FLVBiflaviolin synthase CYP158A2 / 0.744
2fzk CTPAspartate carbamoyltransferase regulatory chain / 0.744
2jey HLOAcetylcholinesterase 3.1.1.7 0.744
2oap ANPType II secretion system protein (GspE-2) / 0.744
2z7q ACPRibosomal protein S6 kinase alpha-1 2.7.11.1 0.744
3fzf ATPHeat shock cognate 71 kDa protein / 0.744
3ypi PGHTriosephosphate isomerase 5.3.1.1 0.744
3zzn ADPL-lactate dehydrogenase / 0.744
4e5l DBHPolymerase acidic protein / 0.744
5bnt NAPAspartate-semialdehyde dehydrogenase 1.2.1.11 0.744
2gyw OBIAcetylcholinesterase 3.1.1.7 0.734
4ihq ADPConserved Archaeal protein / 0.668
1fp6 ADPNitrogenase iron protein 1 1.18.6.1 0.660
1h48 C5P2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12 0.660
1yra GDPGPN-loop GTPase PAB0955 / 0.660
2hru ADPPhosphoribosylformylglycinamidine synthase subunit PurL / 0.660
2hs4 ACPPhosphoribosylformylglycinamidine synthase subunit PurL / 0.660
2puf GUNHTH-type transcriptional repressor PurR / 0.660
2xtn GTPGTPase IMAP family member 2 / 0.660
3fwy ADPLight-independent protochlorophyllide reductase iron-sulfur ATP-binding protein / 0.660
4cdg ADPBloom syndrome protein 3.6.4.12 0.660
4nxx GDPMitochondrial dynamics protein MID51 / 0.660
4o3m ADPBloom syndrome protein 3.6.4.12 0.660
1ftl DNQGlutamate receptor 2 / 0.654
1gld ADPGlycerol kinase / 0.654
1nm1 ATPMajor actin / 0.654
2e9z UTPGenome polyprotein / 0.654
2fl2 ADPKinesin-like protein KIF11 / 0.654
2jlr ANPGenome polyprotein 3.4.21.91 0.654
2q2y ADPKinesin-like protein KIF11 / 0.654
3asj XYNHomoisocitrate dehydrogenase / 0.654
3eks ATPActin-5C / 0.654
3ge1 ADPGlycerol kinase / 0.654
3ms5 REEGamma-butyrobetaine dioxygenase 1.14.11.1 0.654
3rkr NAPUncharacterized protein / 0.654
5ero 210Fusicoccadiene synthase 2.5.1.29 0.654
3axk NDPRibulose bisphosphate carboxylase large chain 4.1.1.39 0.653