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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2gvc FAD Thiol-specific monooxygenase 1.14.13

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
2gvc FADThiol-specific monooxygenase 1.14.13 1.373
2gv8 FADThiol-specific monooxygenase 1.14.13 1.324
2xvf FADPutative flavin-containing monooxygenase / 0.894
2xvi FADPutative flavin-containing monooxygenase / 0.829
2xve FADPutative flavin-containing monooxygenase / 0.821
3s5w FADL-ornithine N(5)-monooxygenase / 0.821
4tm3 FADKtzI / 0.819
2ylx FADPhenylacetone monooxygenase 1.14.13.92 0.817
4b69 FADL-ornithine N(5)-monooxygenase / 0.816
2q7v FADThioredoxin reductase / 0.815
2vq7 FADPutative flavin-containing monooxygenase / 0.812
3uov FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.805
3uoy FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.801
4b63 FADL-ornithine N(5)-monooxygenase / 0.798
4b68 FADL-ornithine N(5)-monooxygenase / 0.798
4jdr FADDihydrolipoyl dehydrogenase 1.8.1.4 0.798
3rha FDAPutrescine oxidase / 0.796
4b64 FADL-ornithine N(5)-monooxygenase / 0.789
2xlp FADPutative flavin-containing monooxygenase / 0.788
1cjc FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.785
2xvh FADPutative flavin-containing monooxygenase / 0.780
4ap3 FADSteroid monooxygenase / 0.780
5g3s FDAFlavin-dependent L-tryptophan oxidase VioA / 0.774
2vqb FADPutative flavin-containing monooxygenase / 0.770
5cku FADL-ornithine N(5)-monooxygenase / 0.770
3ish FADThioredoxin reductase 1.8.1.9 0.768
1zmc FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.767
4aos FADSteroid monooxygenase / 0.765
4b65 FADL-ornithine N(5)-monooxygenase / 0.764
2xls FADPutative flavin-containing monooxygenase / 0.763
4b66 FADL-ornithine N(5)-monooxygenase / 0.763
4tlz FADKtzI / 0.763
2ylt FADPhenylacetone monooxygenase 1.14.13.92 0.761
3uox FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.761
2b9y FADPutative aminooxidase / 0.759
1e1k FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.758
1w4x FADPhenylacetone monooxygenase 1.14.13.92 0.758
3gwd FADCyclohexanone monooxygenase / 0.758
2ym2 FADPhenylacetone monooxygenase 1.14.13.92 0.757
2xlr FADPutative flavin-containing monooxygenase / 0.756
4jq9 FADDihydrolipoyl dehydrogenase / 0.756
2ylw FADPhenylacetone monooxygenase 1.14.13.92 0.755
3int FDAUDP-galactopyranose mutase 5.4.99.9 0.755
4d04 FADPhenylacetone monooxygenase 1.14.13.92 0.755
2bab FADPutative aminooxidase / 0.754
2bac FADPutative aminooxidase / 0.754
2yls FADPhenylacetone monooxygenase 1.14.13.92 0.754
3gwf FADCyclohexanone monooxygenase / 0.751
4mih FADPyranose 2-oxidase 1.1.3.10 0.751
1e1l FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.750
3up5 FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.750
4u8n FDAUDP-galactopyranose mutase / 0.749
3lzw FADFerredoxin--NADP reductase 2 1.18.1.2 0.748
2yg6 FADPutrescine oxidase / 0.744
4u8o FDAUDP-galactopyranose mutase / 0.743
1ebd FADDihydrolipoyl dehydrogenase 1.8.1.4 0.741
4hb9 FADUncharacterized protein / 0.741
1zmd FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.739
1e6e FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.738
2ylz FADPhenylacetone monooxygenase 1.14.13.92 0.738
1cc2 FADCholesterol oxidase 1.1.3.6 0.736
1lqu FADNADPH-ferredoxin reductase FprA 1.18.1.2 0.735
2r9z FADGlutathione amide reductase / 0.735
1lvl FADDihydrolipoyl dehydrogenase 1.8.1.4 0.734
3rnm FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.734
4gdp FADPolyamine oxidase FMS1 / 0.734
3ab1 FADFerredoxin--NADP reductase 1.18.1.2 0.732
1ojt FADDihydrolipoyl dehydrogenase / 0.731
2f5z FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.731
3pl8 FADPyranose 2-oxidase / 0.731
4x4j FADPutative oxygenase / 0.731
5g3t FDAFlavin-dependent L-tryptophan oxidase VioA / 0.731
4dsg FADUncharacterized protein / 0.730
4d03 FADPhenylacetone monooxygenase 1.14.13.92 0.729
2ylr FADPhenylacetone monooxygenase 1.14.13.92 0.728
3lsm SFDPyranose 2-oxidase / 0.728
2eq7 FADDihydrolipoyl dehydrogenase / 0.727
2jae FADL-amino acid oxidase / 0.727
4b67 FADL-ornithine N(5)-monooxygenase / 0.727
2yg5 FADPutrescine oxidase / 0.725
2bry FAD[F-actin]-methionine sulfoxide oxidase MICAL1 1.14.13 0.724
2ba9 FADPutative aminooxidase / 0.723
1e1n FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.721
2eq8 FADDihydrolipoyl dehydrogenase / 0.721
1e1m FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.720
3sqp FADGlutathione reductase, mitochondrial 1.8.1.7 0.719
2igo FADPyranose 2-oxidase / 0.718
2ym1 FADPhenylacetone monooxygenase 1.14.13.92 0.717
3lsi FADPyranose 2-oxidase / 0.716
3mj4 FADUDP-galactopyranose mutase / 0.716
2c7g FADNADPH-ferredoxin reductase FprA 1.18.1.2 0.715
3ean FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.715
3ukl FADUDP-galactopyranose mutase / 0.715
4gcm FADThioredoxin reductase 1.8.1.9 0.715
1cbo FADCholesterol oxidase 1.1.3.6 0.714
3dk9 FADGlutathione reductase, mitochondrial 1.8.1.7 0.714
3sz0 FADSulfide-quinone reductase / 0.714
1n4u FAECholesterol oxidase 1.1.3.6 0.713
1wam FADUDP-galactopyranose mutase 5.4.99.9 0.713
2b9x FADPutative aminooxidase / 0.712
4tm0 FADKtzI / 0.712
5br7 FADUDP-galactopyranose mutase / 0.712
1grb FADGlutathione reductase, mitochondrial 1.8.1.7 0.710
2eq6 FADDihydrolipoyl dehydrogenase / 0.710
1f3p FADFerredoxin reductase / 0.708
1get FADGlutathione reductase 1.8.1.7 0.708
3lov FADProtoporphyrinogen oxidase / 0.708
4xxg FADCholesterol oxidase 1.1.3.6 0.708
2hko FADLysine-specific histone demethylase 1A 1 0.705
2b9w FADPutative aminooxidase / 0.704
3bi2 FADPolyamine oxidase FMS1 / 0.703
4em4 FADCoenzyme A disulfide reductase / 0.703
1d4d FADFumarate reductase flavoprotein subunit 1.3.5.4 0.702
1geu FADGlutathione reductase 1.8.1.7 0.702
1jnz FADAdenylylsulfate reductase, subunit A (AprA) / 0.702
2cvj FADThioredoxin reductase related protein / 0.702
3kyb FADUDP-galactopyranose mutase 5.4.99.9 0.702
4tm4 FDAKtzI / 0.701
1b8s FADCholesterol oxidase 1.1.3.6 0.700
2bi8 FADUDP-galactopyranose mutase 5.4.99.9 0.700
4rek FADCholesterol oxidase 1.1.3.6 0.700
1v0j FADUDP-galactopyranose mutase 5.4.99.9 0.699
3gyi FADCholesterol oxidase 1.1.3.6 0.699
4bk3 FADProbable salicylate monooxygenase / 0.699
4u2s FDACholesterol oxidase 1.1.3.6 0.699
1nhq FADNADH peroxidase 1.11.1.1 0.698
4cnk FADL-amino acid oxidase / 0.698
4jn9 FADDepH / 0.698
2e1m FADL-glutamate oxidase / 0.697
3f8r NAPNADH oxidase/thioredoxin reductase / 0.697
3hdy FADUDP-galactopyranose mutase / 0.697
4ap1 FADSteroid monooxygenase / 0.697
4o5u FADAlkyl hydroperoxide reductase subunit F 1.8.1 0.697
1n1p FADCholesterol oxidase 1.1.3.6 0.696
3cnj FADCholesterol oxidase 1.1.3.6 0.696
4mo2 FDAUDP-galactopyranose mutase / 0.696
3f8p NADNADH oxidase/thioredoxin reductase / 0.695
1y56 ATPUncharacterized protein / 0.694
2bra FAD[F-actin]-methionine sulfoxide oxidase MICAL1 1.14.13 0.694
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.694
3he3 FADUDP-galactopyranose mutase / 0.694
4tm1 FDAKtzI / 0.694
2whd FADThioredoxin reductase / 0.693
2yg4 FADPutrescine oxidase / 0.693
3ef6 FADToluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component 1.18.1.3 0.693
4mo2 FADUDP-galactopyranose mutase / 0.693
1gre FADGlutathione reductase, mitochondrial 1.8.1.7 0.692
1ijh FADCholesterol oxidase 1.1.3.6 0.691
3b6d FAECholesterol oxidase 1.1.3.6 0.691
3grs FADGlutathione reductase, mitochondrial 1.8.1.7 0.691
4a99 FADTetX family tetracycline inactivation enzyme / 0.691
4dsh FDAUncharacterized protein / 0.691
3cox FADCholesterol oxidase 1.1.3.6 0.690
1npx FADNADH peroxidase 1.11.1.1 0.689
1ps9 FAD2,4-dienoyl-CoA reductase 1.3.1.34 0.689
3dk4 FADGlutathione reductase, mitochondrial 1.8.1.7 0.689
3up4 FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.689
4mok FADPyranose 2-oxidase / 0.689
4tlx FDAKtzI / 0.689
1mxt FAECholesterol oxidase 1.1.3.6 0.688
2ji6 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.688
1n4v FADCholesterol oxidase 1.1.3.6 0.687
1n4w FADCholesterol oxidase 1.1.3.6 0.687
4u2t FADCholesterol oxidase 1.1.3.6 0.687
4xwr FADCholesterol oxidase 1.1.3.6 0.687
1cf3 FADGlucose oxidase 1.1.3.4 0.686
2gr0 FADFerredoxin reductase / 0.686
4yac NAIC alpha-dehydrogenase / 0.685
1gal FADGlucose oxidase 1.1.3.4 0.684
3r9u FADThioredoxin reductase / 0.684
1b4v FADCholesterol oxidase 1.1.3.6 0.683
2gew FADCholesterol oxidase 1.1.3.6 0.683
2rgj FADFlavin-containing monooxygenase / 0.683
2yg3 FADPutrescine oxidase / 0.683
3l8k ADPDihydrolipoamide dehydrogenase (PdhD-3) / 0.683
3utg FDAUDP-galactopyranose mutase / 0.683
2dki FAD3-hydroxybenzoate 4-monooxygenase 1.14.13.23 0.681
3k30 ADPHistamine dehydrogenase / 0.681
4xbf FADLysine-specific histone demethylase 1A 1 0.681
2yqu FADDihydrolipoyl dehydrogenase / 0.680
3klj FADNADH-rubredoxin oxidoreductase 1.18.1.1 0.680
3utf FDAUDP-galactopyranose mutase / 0.680
1bwc FADGlutathione reductase, mitochondrial 1.8.1.7 0.679
3k4c FADPyranose 2-oxidase / 0.679
5j60 FADThioredoxin reductase / 0.678
3dk8 FADGlutathione reductase, mitochondrial 1.8.1.7 0.677
3k4n FADPyranose 2-oxidase / 0.677
4gus FADLysine-specific histone demethylase 1B 1 0.677
1k0l FADp-hydroxybenzoate hydroxylase / 0.676
2rgo FADAlpha-Glycerophosphate Oxidase / 0.676
3k7m FAD6-hydroxy-L-nicotine oxidase / 0.676
2ign FADPyranose 2-oxidase / 0.675
4gut FADLysine-specific histone demethylase 1B 1 0.675
4yai NAIC alpha-dehydrogenase / 0.675
1nhr FADNADH peroxidase 1.11.1.1 0.674
2jb2 FADL-amino acid oxidase / 0.674
4o5q FADAlkyl hydroperoxide reductase subunit F 1.8.1 0.674
1zmc NADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.673
3ka7 FADPutative oxidoreductase / 0.673
4aox FADSteroid monooxygenase / 0.673
1gsn FADGlutathione reductase, mitochondrial 1.8.1.7 0.672
1nhs FADNADH peroxidase 1.11.1.1 0.672
4qi5 FADCellobiose dehydrogenase / 0.672
3bi5 FADPolyamine oxidase FMS1 / 0.671
3kkj FADRenalase / 0.671
3uth FDAUDP-galactopyranose mutase / 0.671
4u8j FDAUDP-galactopyranose mutase / 0.671
1fl2 FADAlkyl hydroperoxide reductase subunit F 1.8.1 0.669
3kve FADL-amino-acid oxidase / 0.668
4lii FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.668
4nte FADDepH / 0.668
1gpe FADGlucose oxidase 1.1.3.4 0.667
3ukk FADUDP-galactopyranose mutase / 0.667
4j57 FADThioredoxin reductase 2 1.8.1.9 0.667
1k4q FADGlutathione reductase, mitochondrial 1.8.1.7 0.666
4bv6 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.666
1rp0 AHZThiamine thiazole synthase, chloroplastic / 0.665
3gyj FADCholesterol oxidase 1.1.3.6 0.665
5fs7 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.665
1nhp FADNADH peroxidase 1.11.1.1 0.664
1y56 FAD382aa long hypothetical sarcosine oxidase / 0.664
2zbw FADFerredoxin--NADP reductase / 0.664
3lsh FADPyranose 2-oxidase / 0.664
2npx FADNADH peroxidase 1.11.1.1 0.663
4bk2 FADProbable salicylate monooxygenase / 0.663
4opl FDAConserved Archaeal protein / 0.663
4udr FAD5-(hydroxymethyl)furfural oxidase / 0.663
1f8s FADL-amino-acid oxidase 1.4.3.2 0.662
3bg7 FADPyranose 2-oxidase / 0.662
3g8a SAHRibosomal RNA small subunit methyltransferase G / 0.662
3nlc FADUncharacterized protein / 0.662
4u8p FDAUDP-galactopyranose mutase / 0.662
5fs6 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.662
1h2h NADL-aspartate dehydrogenase 1.4.1.21 0.661
1i8t FADUDP-galactopyranose mutase 5.4.99.9 0.661
1zx9 FADMercuric reductase 1.16.1.1 0.661
2c3c FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.661
2dw4 FADLysine-specific histone demethylase 1A 1 0.661
2vvl FADMonoamine oxidase N 1.4.3.4 0.661
4gur FADLysine-specific histone demethylase 1B 1 0.661
4iv8 SAMPhosphoethanolamine N-methyltransferase,putative / 0.661
1tde FADThioredoxin reductase 1.8.1.9 0.660
3nt6 FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.660
2qae FADDihydrolipoyl dehydrogenase 1.8.1.4 0.659
3atq FDAConserved Archaeal protein / 0.659
4fwj FADLysine-specific histone demethylase 1B 1 0.659
4z26 FADPutative GMC-type oxidoreductase R135 1 0.659
2i0z FADNAD(FAD)-utilizing dehydrogenases / 0.658
3ics FADCoenzyme A disulfide reductase / 0.658
3lxd FADFAD-dependent pyridine nucleotide-disulfide oxidoreductase / 0.658
3oz2 FADDigeranylgeranylglycerophospholipid reductase / 0.658
5hhf FDAUDP-galactopyranose mutase / 0.657
3cnt FADPolyamine oxidase FMS1 / 0.656
3ukk FDAUDP-galactopyranose mutase / 0.656
2eq9 FADDihydrolipoyl dehydrogenase / 0.655
2hmv ADPKtr system potassium uptake protein A / 0.655
3wv8 ATPHmd co-occurring protein HcgE / 0.655
4fwf FADLysine-specific histone demethylase 1B 1 0.655
4g6h NAIRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial 1.6.5.9 0.655
4gdc FADUDP-galactopyranose mutase / 0.655
2fje FADAdenylylsulfate reductase, subunit A (AprA) / 0.654
1f8w FADNADH peroxidase 1.11.1.1 0.653
2q0l FADThioredoxin reductase 1.8.1.9 0.653
3ihg FADAklavinone 12-hydroxylase RdmE / 0.653
3jsk AHZThiamine thiazole synthase / 0.653
3q9t FAYUncharacterized protein / 0.653
3t2z FADSulfide-quinone reductase / 0.653
3wv7 ADPHmd co-occurring protein HcgE / 0.653
4kpr FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.653
4wx1 FDAUDP-galactopyranose mutase / 0.653
1h83 FADPolyamine oxidase 1.5.3.14 0.652
3djj FADGlutathione reductase, mitochondrial 1.8.1.7 0.652
4u8m FDAUDP-galactopyranose mutase / 0.652
2cdu ADPNADH oxidase / 0.651
3lzx FADFerredoxin--NADP reductase 2 1.18.1.2 0.651
4ocg FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.651
4guv FADTetX family tetracycline inactivation enzyme / 0.650
4ntc FADThioredoxin reductase gliT / 0.650
5jdz SAHMethyl transferase / 0.650