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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2gv8 FAD Thiol-specific monooxygenase 1.14.13

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
2gv8 FADThiol-specific monooxygenase 1.14.13 1.463
2gvc FADThiol-specific monooxygenase 1.14.13 1.324
2xvf FADPutative flavin-containing monooxygenase / 0.897
2xlr FADPutative flavin-containing monooxygenase / 0.874
2vqb FADPutative flavin-containing monooxygenase / 0.856
4jdr FADDihydrolipoyl dehydrogenase 1.8.1.4 0.848
2xve FADPutative flavin-containing monooxygenase / 0.840
3uov FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.840
4nzh FADL-ornithine N(5)-monooxygenase / 0.837
3gwd FADCyclohexanone monooxygenase / 0.831
1w4x FADPhenylacetone monooxygenase 1.14.13.92 0.829
4aos FADSteroid monooxygenase / 0.818
4ap3 FADSteroid monooxygenase / 0.818
5g3t FDAFlavin-dependent L-tryptophan oxidase VioA / 0.807
2xvi FADPutative flavin-containing monooxygenase / 0.804
2xvh FADPutative flavin-containing monooxygenase / 0.803
4jq9 FADDihydrolipoyl dehydrogenase / 0.803
3pl8 FADPyranose 2-oxidase / 0.794
3uoz FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.792
4tm3 FADKtzI / 0.792
3s5w FADL-ornithine N(5)-monooxygenase / 0.789
2b9y FADPutative aminooxidase / 0.787
1ges FADGlutathione reductase 1.8.1.7 0.786
4mih FADPyranose 2-oxidase 1.1.3.10 0.786
4x4j FADPutative oxygenase / 0.785
4b69 FADL-ornithine N(5)-monooxygenase / 0.780
2vq7 FADPutative flavin-containing monooxygenase / 0.776
1cc2 FADCholesterol oxidase 1.1.3.6 0.773
3ab1 FADFerredoxin--NADP reductase 1.18.1.2 0.772
3int FDAUDP-galactopyranose mutase 5.4.99.9 0.771
2xlp FADPutative flavin-containing monooxygenase / 0.770
2xls FADPutative flavin-containing monooxygenase / 0.769
4tlz FADKtzI / 0.769
2ylr FADPhenylacetone monooxygenase 1.14.13.92 0.767
2yls FADPhenylacetone monooxygenase 1.14.13.92 0.761
1zmc FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.757
2bab FADPutative aminooxidase / 0.756
1b8s FADCholesterol oxidase 1.1.3.6 0.755
2b9w FADPutative aminooxidase / 0.755
4d03 FADPhenylacetone monooxygenase 1.14.13.92 0.755
3up5 FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.754
1get FADGlutathione reductase 1.8.1.7 0.753
2b9x FADPutative aminooxidase / 0.753
2bi8 FADUDP-galactopyranose mutase 5.4.99.9 0.753
2bra FAD[F-actin]-methionine sulfoxide oxidase MICAL1 1.14.13 0.752
4xxg FADCholesterol oxidase 1.1.3.6 0.751
1ijh FADCholesterol oxidase 1.1.3.6 0.750
2yg4 FADPutrescine oxidase / 0.750
3ish FADThioredoxin reductase 1.8.1.9 0.749
1b4v FADCholesterol oxidase 1.1.3.6 0.748
1cbo FADCholesterol oxidase 1.1.3.6 0.747
3lsi FADPyranose 2-oxidase / 0.747
3sz0 FADSulfide-quinone reductase / 0.747
3uox FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.747
4cnk FADL-amino acid oxidase / 0.747
2ign FADPyranose 2-oxidase / 0.746
2yg3 FADPutrescine oxidase / 0.746
4gut FADLysine-specific histone demethylase 1B 1 0.746
4b65 FADL-ornithine N(5)-monooxygenase / 0.745
2ylt FADPhenylacetone monooxygenase 1.14.13.92 0.743
4rek FADCholesterol oxidase 1.1.3.6 0.743
2bi7 FADUDP-galactopyranose mutase 5.4.99.9 0.742
1mxt FAECholesterol oxidase 1.1.3.6 0.741
1n1p FADCholesterol oxidase 1.1.3.6 0.741
1n4u FAECholesterol oxidase 1.1.3.6 0.741
1n4v FADCholesterol oxidase 1.1.3.6 0.741
1n4w FADCholesterol oxidase 1.1.3.6 0.741
3cnj FADCholesterol oxidase 1.1.3.6 0.741
4xwr FADCholesterol oxidase 1.1.3.6 0.741
3rha FDAPutrescine oxidase / 0.740
2q7v FADThioredoxin reductase / 0.739
1wam FADUDP-galactopyranose mutase 5.4.99.9 0.738
2f5z FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.738
3gyi FADCholesterol oxidase 1.1.3.6 0.738
3gyj FADCholesterol oxidase 1.1.3.6 0.738
1e1l FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.737
2yr4 FADPhenylalanine 2-monooxygenase precursor 1.13.12.9 0.737
3b6d FAECholesterol oxidase 1.1.3.6 0.737
4b68 FADL-ornithine N(5)-monooxygenase / 0.737
2ylz FADPhenylacetone monooxygenase 1.14.13.92 0.736
4ap1 FADSteroid monooxygenase / 0.736
2gew FADCholesterol oxidase 1.1.3.6 0.735
3uoy FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.733
4u2t FADCholesterol oxidase 1.1.3.6 0.733
1v59 FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.731
3he3 FADUDP-galactopyranose mutase / 0.731
3k4c FADPyranose 2-oxidase / 0.731
4b66 FADL-ornithine N(5)-monooxygenase / 0.731
4tm4 FDAKtzI / 0.731
2r9z FADGlutathione amide reductase / 0.730
2yg5 FADPutrescine oxidase / 0.730
5cku FADL-ornithine N(5)-monooxygenase / 0.730
5g3s FDAFlavin-dependent L-tryptophan oxidase VioA / 0.730
3lzw FADFerredoxin--NADP reductase 2 1.18.1.2 0.728
4dsg FADUncharacterized protein / 0.728
1dnc FADGlutathione reductase, mitochondrial 1.8.1.7 0.727
1tdk FADL-amino-acid oxidase 1.4.3.2 0.727
5eow FAD6-hydroxynicotinate 3-monooxygenase 1.14.13.114 0.727
1grb FADGlutathione reductase, mitochondrial 1.8.1.7 0.725
1tdn FADL-amino-acid oxidase 1.4.3.2 0.725
1i8t FADUDP-galactopyranose mutase 5.4.99.9 0.723
2i0z FADNAD(FAD)-utilizing dehydrogenases / 0.723
4u2s FDACholesterol oxidase 1.1.3.6 0.723
2bac FADPutative aminooxidase / 0.721
2c7g FADNADPH-ferredoxin reductase FprA 1.18.1.2 0.721
1e1k FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.718
2yg6 FADPutrescine oxidase / 0.718
3cnt FADPolyamine oxidase FMS1 / 0.718
1y56 ATPUncharacterized protein / 0.717
1cjc FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.716
2gmh FADElectron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial 1.5.5.1 0.716
2y48 FADLysine-specific histone demethylase 1A 1 0.716
4gus FADLysine-specific histone demethylase 1B 1 0.716
3cox FADCholesterol oxidase 1.1.3.6 0.715
3oz2 FADDigeranylgeranylglycerophospholipid reductase / 0.714
3rnm FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.714
3hdy FADUDP-galactopyranose mutase / 0.713
1e6e FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.712
1h7w FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.712
2eq9 FADDihydrolipoyl dehydrogenase / 0.712
3fg2 FADPutative rubredoxin reductase / 0.712
2igo FADPyranose 2-oxidase / 0.711
4gcm FADThioredoxin reductase 1.8.1.9 0.710
1jnr FADAdenylylsulfate reductase, subunit A (AprA) / 0.709
2ba9 FADPutative aminooxidase / 0.709
3gwf FADCyclohexanone monooxygenase / 0.708
3ict FADCoenzyme A disulfide reductase / 0.708
3lzx FADFerredoxin--NADP reductase 2 1.18.1.2 0.708
1h83 FADPolyamine oxidase 1.5.3.14 0.707
4aox FADSteroid monooxygenase / 0.707
3lsm SFDPyranose 2-oxidase / 0.706
4fwf FADLysine-specific histone demethylase 1B 1 0.706
4jn9 FADDepH / 0.706
4o5q FADAlkyl hydroperoxide reductase subunit F 1.8.1 0.706
1ebd FADDihydrolipoyl dehydrogenase 1.8.1.4 0.705
1gte FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.704
2ylx FADPhenylacetone monooxygenase 1.14.13.92 0.703
1ojt FADDihydrolipoyl dehydrogenase / 0.702
5j4e FMNSensory box protein / 0.702
2ym2 FADPhenylacetone monooxygenase 1.14.13.92 0.701
2hko FADLysine-specific histone demethylase 1A 1 0.700
2yqu FADDihydrolipoyl dehydrogenase / 0.700
3f8d FADNADH oxidase/thioredoxin reductase / 0.700
1ps9 FAD2,4-dienoyl-CoA reductase 1.3.1.34 0.699
4opi FDAConserved Archaeal protein / 0.698
5fs9 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.697
2tmd ADPTrimethylamine dehydrogenase 1.5.8.2 0.696
3f8p NADNADH oxidase/thioredoxin reductase / 0.696
4xbf FADLysine-specific histone demethylase 1A 1 0.696
5er0 FADUncharacterized NAD(FAD)-dependent dehydrogenase / 0.696
3mj4 FADUDP-galactopyranose mutase / 0.695
1d7l RFLp-hydroxybenzoate hydroxylase / 0.694
4cnj FADL-amino acid oxidase / 0.694
5j3w FMNSensory box protein / 0.694
1e1m FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.693
1zmd FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.693
4hj3 FMNLOV protein / 0.693
4u2l SFDCholesterol oxidase 1.1.3.6 0.693
1grh FADGlutathione reductase, mitochondrial 1.8.1.7 0.692
1yy5 FADPolyamine oxidase FMS1 / 0.692
2yg7 FADPutrescine oxidase / 0.692
4bv6 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.692
4txi FAD[F-actin]-methionine sulfoxide oxidase MICAL1 1.14.13 0.692
4z24 FADPutative GMC-type oxidoreductase R135 1 0.692
1jeh FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.691
1e1n FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.690
4fwj FADLysine-specific histone demethylase 1B 1 0.690
3r9u FADThioredoxin reductase / 0.689
4kpr FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.689
1geu FADGlutathione reductase 1.8.1.7 0.688
4qi5 FADCellobiose dehydrogenase / 0.688
4tlx FDAKtzI / 0.687
1bwc FADGlutathione reductase, mitochondrial 1.8.1.7 0.686
2eq7 FADDihydrolipoyl dehydrogenase / 0.686
1v0j FADUDP-galactopyranose mutase 5.4.99.9 0.685
2e1m FADL-glutamate oxidase / 0.685
4d04 FADPhenylacetone monooxygenase 1.14.13.92 0.685
2jae FADL-amino acid oxidase / 0.684
3cn8 FADPolyamine oxidase FMS1 / 0.684
4m52 FADDihydrolipoyl dehydrogenase 1.8.1.4 0.684
4opt FDAConserved Archaeal protein / 0.684
1ju2 FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.683
2jb2 FADL-amino acid oxidase / 0.683
3k7m FAD6-hydroxy-L-nicotine oxidase / 0.683
4wx1 FDAUDP-galactopyranose mutase / 0.683
2a8x FADDihydrolipoyl dehydrogenase 1.8.1.4 0.682
4gde FDAUDP-galactopyranose mutase / 0.682
4nte FADDepH / 0.682
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.681
3dk4 FADGlutathione reductase, mitochondrial 1.8.1.7 0.680
5eb5 FAD(R)-mandelonitrile lyase 1 4.1.2.10 0.680
1kif FADD-amino-acid oxidase 1.4.3.3 0.679
2e0i FADDNA photolyase / 0.679
4j57 FADThioredoxin reductase 2 1.8.1.9 0.679
2c3c FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.678
1grg FADGlutathione reductase, mitochondrial 1.8.1.7 0.677
1jnz FADAdenylylsulfate reductase, subunit A (AprA) / 0.677
2hqm FADGlutathione reductase 1.8.1.7 0.676
3up4 FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.676
4hsu FADLysine-specific histone demethylase 1B 1 0.676
4u8o FDAUDP-galactopyranose mutase / 0.676
1lqu FADNADPH-ferredoxin reductase FprA 1.18.1.2 0.675
1mo9 FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.675
3bg7 FADPyranose 2-oxidase / 0.675
3f8r NAPNADH oxidase/thioredoxin reductase / 0.675
3ihg FADAklavinone 12-hydroxylase RdmE / 0.675
4b64 FADL-ornithine N(5)-monooxygenase / 0.675
2yr5 FADPhenylalanine 2-monooxygenase precursor 1.13.12.9 0.674
3ka7 FADPutative oxidoreductase / 0.674
3oc4 FADOxidoreductase, pyridine nucleotide-disulfide family / 0.674
4mo2 FDAUDP-galactopyranose mutase / 0.674
4qi4 FADCellobiose dehydrogenase / 0.674
4a99 FADTetX family tetracycline inactivation enzyme / 0.673
4c3x FAD3-ketosteroid dehydrogenase / 0.673
2jb1 FADL-amino acid oxidase / 0.672
2qae FADDihydrolipoyl dehydrogenase 1.8.1.4 0.672
2wes FADTryptophan 5-halogenase / 0.672
3c96 FADFlavin-containing monooxygenase / 0.672
1d4d FADFumarate reductase flavoprotein subunit 1.3.5.4 0.671
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.671
1zmc NADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.671
2ym1 FADPhenylacetone monooxygenase 1.14.13.92 0.671
3kve FADL-amino-acid oxidase / 0.671
4rpg FADUDP-galactopyranose mutase 5.4.99.9 0.671
2qa1 FADPgaE / 0.670
2ylw FADPhenylacetone monooxygenase 1.14.13.92 0.670
4yac NAIC alpha-dehydrogenase / 0.670
5buk FADFADH2-dependent halogenase / 0.670
5j60 FADThioredoxin reductase / 0.670
3kyb FADUDP-galactopyranose mutase 5.4.99.9 0.669
3l8k ADPDihydrolipoamide dehydrogenase (PdhD-3) / 0.669
3nn6 FB06-hydroxy-L-nicotine oxidase / 0.669
3syi FADSulfide-quinone reductase / 0.669
3ukl FADUDP-galactopyranose mutase / 0.669
4bk2 FADProbable salicylate monooxygenase / 0.669
4opd FDAConserved Archaeal protein / 0.669
1onf FADGlutathione reductase 1.8.1.7 0.668
3t2y FADSulfide-quinone reductase / 0.668
1nhs FADNADH peroxidase 1.11.1.1 0.667
2fje FADAdenylylsulfate reductase, subunit A (AprA) / 0.667
3dk9 FADGlutathione reductase, mitochondrial 1.8.1.7 0.667
3grs FADGlutathione reductase, mitochondrial 1.8.1.7 0.667
3sfe FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.667
1gv4 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.666
1h81 FADPolyamine oxidase 1.5.3.14 0.666
1mok FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.665
3qvp FADGlucose oxidase 1.1.3.4 0.665
3bgi SAHThiopurine S-methyltransferase 2.1.1.67 0.664
4hb9 FADUncharacterized protein / 0.664
1djn ADPTrimethylamine dehydrogenase 1.5.8.2 0.663
1m6i FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.663
1nhp FADNADH peroxidase 1.11.1.1 0.663
2q0k FADThioredoxin reductase 1.8.1.9 0.663
3k4n FADPyranose 2-oxidase / 0.663
3qfa FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.663
4b1b FADThioredoxin reductase 1.8.1.9 0.663
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.663
3m0o FADMonomeric sarcosine oxidase 1.5.3.1 0.662
5c2t FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.662
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.661
3cgd FADCoenzyme A disulfide reductase / 0.661
3kkj FADRenalase / 0.661
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.660
4lii FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.660
4tm0 FADKtzI / 0.660
1fec FADTrypanothione reductase 1.8.1.12 0.659
1trb FADThioredoxin reductase 1.8.1.9 0.659
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.658
4dsh FDAUncharacterized protein / 0.658
4o5u FADAlkyl hydroperoxide reductase subunit F 1.8.1 0.658
4u8n FDAUDP-galactopyranose mutase / 0.658
1pkv RBFRiboflavin synthase 2.5.1.9 0.657
2ijg FADCryptochrome DASH, chloroplastic/mitochondrial / 0.657
2zbw FADFerredoxin--NADP reductase / 0.657
4gdc FADUDP-galactopyranose mutase / 0.657
4yry FADGlutamate synthase, beta subunit / 0.657
1fl2 FADAlkyl hydroperoxide reductase subunit F 1.8.1 0.656
2rab FADGlutathione amide reductase / 0.655
2rgj FADFlavin-containing monooxygenase / 0.655
3ean FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.655
3nyc FADFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.655
3sqp FADGlutathione reductase, mitochondrial 1.8.1.7 0.655
3atr FDAConserved Archaeal protein / 0.654
3dh9 FADThioredoxin reductase 1, mitochondrial 1.8.1.9 0.654
4ntd FADThioredoxin reductase / 0.654
2wow FADTrypanothione reductase / 0.653
3urh FADDihydrolipoyl dehydrogenase / 0.653
4dna FADProbable glutathione reductase / 0.653
3cls FADElectron transfer flavoprotein subunit alpha / 0.652
3cty FADProbable thioredoxin reductase / 0.652
5hhf FDAUDP-galactopyranose mutase / 0.652
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.651
1que FADFerredoxin--NADP reductase 1.18.1.2 0.651
2eq8 FADDihydrolipoyl dehydrogenase / 0.651
3clt FADElectron transfer flavoprotein subunit alpha / 0.651
4b63 FADL-ornithine N(5)-monooxygenase / 0.651
1djq ADPTrimethylamine dehydrogenase 1.5.8.2 0.650
1o94 ADPTrimethylamine dehydrogenase 1.5.8.2 0.650
2cdu ADPNADH oxidase / 0.650
2wet FADTryptophan 5-halogenase / 0.650
3lsh FADPyranose 2-oxidase / 0.650
4bur FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.650
4hj4 FMNLOV protein / 0.650
4ntc FADThioredoxin reductase gliT / 0.650