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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2gr2 APR Ferredoxin reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2gr2 APRFerredoxin reductase / 1.098
2yvg NADFerredoxin reductase / 0.805
2yvf NADFerredoxin reductase / 0.747
2gr0 ADPFerredoxin reductase / 0.739
4emi NADToluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component 1.18.1.3 0.730
1zmd NAIDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.722
3cge NDPCoenzyme A disulfide reductase / 0.693
2yvj NAIFerredoxin reductase / 0.677
1f3p NADFerredoxin reductase / 0.672
2eq7 NADDihydrolipoyl dehydrogenase / 0.659
1z7e UGABifunctional polymyxin resistance protein ArnA / 0.653