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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2gmv PEP Phosphoenolpyruvate carboxykinase, cytosolic [GTP] 4.1.1.32

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2gmv PEPPhosphoenolpyruvate carboxykinase, cytosolic [GTP] 4.1.1.32 0.828
2vwq NAPGlucose 1-dehydrogenase / 0.664
2vwh NAPGlucose 1-dehydrogenase / 0.663
2vwp NDPGlucose 1-dehydrogenase / 0.660
2b5v NAPGlucose 1-dehydrogenase / 0.654
1bof GDPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.653