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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2gfd RDA Endoplasmin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2gfd RDAEndoplasmin / 0.990
1qy8 RDIEndoplasmin / 0.816
2xx5 13NATP-dependent molecular chaperone HSP82 / 0.808
2iws NP4ATP-dependent molecular chaperone HSP82 / 0.805
4ce1 7FKATP-dependent molecular chaperone HSP82 / 0.800
2iwu NP5ATP-dependent molecular chaperone HSP82 / 0.795
2fxs RDAATP-dependent molecular chaperone HSP82 / 0.787
2xx4 13IATP-dependent molecular chaperone HSP82 / 0.784
2xx2 13CATP-dependent molecular chaperone HSP82 / 0.780
4ce2 BO5ATP-dependent molecular chaperone HSP82 / 0.776
2xd6 XD6ATP-dependent molecular chaperone HSP82 / 0.769
2iwx M1SATP-dependent molecular chaperone HSP82 / 0.764
3inw JZBHeat shock protein HSP 90-alpha / 0.757
2wer RDCATP-dependent molecular chaperone HSP82 / 0.751
2cgf P2NATP-dependent molecular chaperone HSP82 / 0.745
1u0z RDCEndoplasmin / 0.743
2brc CT5ATP-dependent molecular chaperone HSP82 / 0.723
4b7p 9UNHeat shock protein HSP 90-alpha / 0.719
1bgq RDCATP-dependent molecular chaperone HSP82 / 0.715
2ye4 2FYHeat shock protein HSP 90-alpha / 0.706
4bqj XKLHeat shock protein HSP 90-alpha / 0.690
3eko PYUHeat shock protein HSP 90-alpha / 0.688
4egk RDCHeat shock protein HSP 90-alpha / 0.687
4ce3 L4VATP-dependent molecular chaperone HSP82 / 0.685
2yi5 YI5Heat shock protein HSP 90-alpha / 0.674
2hkj RDCType 2 DNA topoisomerase 6 subunit B / 0.666
3k99 PFTHeat shock protein HSP 90-alpha / 0.664
2ye9 2D4Heat shock protein HSP 90-alpha / 0.658
3hek BD0Heat shock protein HSP 90-alpha / 0.654
2yei XQIHeat shock protein HSP 90-alpha / 0.651