sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2ge3 | ACO | Probable acetyltransferase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 2ge3 | ACO | Probable acetyltransferase | / | 1.348 | |
| 2bue | COA | AAC(6')-Ib | / | 0.890 | |
| 2qir | COA | Aminoglycoside 6-N-acetyltransferase type Ib11 | / | 0.879 | |
| 2prb | COA | Aminoglycoside 6-N-acetyltransferase type Ib11 | / | 0.843 | |
| 2vqy | ACO | AAC(6')-Ib | / | 0.843 | |
| 1v0c | ACO | AAC(6')-Ib | / | 0.775 | |
| 3f8k | COA | Uncharacterized protein | / | 0.771 | |
| 1yre | COA | Uncharacterized protein | / | 0.766 | |
| 1qsm | ACO | Histone acetyltransferase HPA2 | / | 0.760 | |
| 2vzz | SCA | Putative succinyl-CoA transferase Rv0802c | 2.8.3 | 0.754 | |
| 2q4v | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.740 | |
| 3gya | COA | GCN5-related N-acetyltransferase | / | 0.734 | |
| 5kf1 | ACO | Predicted acetyltransferase | / | 0.731 | |
| 4r3k | COA | N-alpha-acetyltransferase | 2.3.1 | 0.730 | |
| 2bei | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.722 | |
| 2b3v | ACO | Diamine acetyltransferase 1 | / | 0.720 | |
| 2bsw | CAO | Probable acetyltransferase | / | 0.718 | |
| 2jdd | ACO | Probable acetyltransferase | / | 0.718 | |
| 3exn | ACO | Probable acetyltransferase | / | 0.717 | |
| 2jdc | CAO | Probable acetyltransferase | / | 0.714 | |
| 1i12 | ACO | Glucosamine 6-phosphate N-acetyltransferase | / | 0.706 | |
| 4u9y | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.706 | |
| 1ib1 | COT | Serotonin N-acetyltransferase | / | 0.705 | |
| 4ava | ACO | Acetyltransferase Pat | 2.3.1 | 0.704 | |
| 4lx9 | ACO | N-alpha-acetyltransferase | 2.3.1 | 0.702 | |
| 1cm0 | COA | Histone acetyltransferase KAT2B | 2.3.1.48 | 0.698 | |
| 1j4j | ACO | Acetyltransferase | 2.3.1 | 0.696 | |
| 2r8v | ACO | Amino-acid acetyltransferase | / | 0.696 | |
| 3gy9 | COA | GCN5-related N-acetyltransferase | / | 0.692 | |
| 5kf9 | ACO | Predicted acetyltransferase | / | 0.692 | |
| 2a4n | COA | Aac(6')-Ii protein | / | 0.691 | |
| 4ag9 | COA | Glucosamine 6-phosphate N-acetyltransferase | / | 0.691 | |
| 1qsr | ACO | HAT A1 | / | 0.690 | |
| 4u9v | ACO | N-alpha-acetyltransferase 40 | 2.3.1 | 0.684 | |
| 4ua3 | COA | N-alpha-acetyltransferase 40 | 2.3.1 | 0.677 | |
| 1cjw | COT | Serotonin N-acetyltransferase | / | 0.676 | |
| 4ag7 | COA | Glucosamine 6-phosphate N-acetyltransferase | / | 0.676 | |
| 1b87 | ACO | Aac(6')-Ii protein | / | 0.675 | |
| 5kf8 | ACO | Predicted acetyltransferase | / | 0.675 | |
| 2cns | ACO | Ribosomal-protein-alanine acetyltransferase | / | 0.673 | |
| 5kgp | ACO | Predicted acetyltransferase | / | 0.672 | |
| 3fbu | COA | Acetyltransferase, GNAT family | / | 0.670 | |
| 1wwz | ACO | Uncharacterized protein | / | 0.667 | |
| 5kf2 | ACO | Predicted acetyltransferase | / | 0.667 | |
| 1qsn | COA | HAT A1 | / | 0.663 | |
| 1kuv | CA5 | Serotonin N-acetyltransferase | / | 0.662 | |
| 1p0h | COA | Mycothiol acetyltransferase | 2.3.1.189 | 0.657 | |
| 4r87 | COA | Spermidine N(1)-acetyltransferase | / | 0.653 | |
| 3q33 | ACO | Histone acetyltransferase RTT109 | 2.3.1.48 | 0.651 |