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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2g1y 5IG Renin 3.4.23.15

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2g1y 5IGRenin 3.4.23.15 1.095
2g1s 4IGRenin 3.4.23.15 0.956
2g1r 3IGRenin 3.4.23.15 0.916
2i4q UA4Renin 3.4.23.15 0.914
2il2 LIXRenin 3.4.23.15 0.893
2g21 L1BRenin 3.4.23.15 0.873
2g1o 2IGRenin 3.4.23.15 0.838
2g22 6IGRenin 3.4.23.15 0.816
2iku LIYRenin 3.4.23.15 0.794
2g1n 1IGRenin 3.4.23.15 0.789
2iko 7IGRenin 3.4.23.15 0.789
2g24 7IGRenin 3.4.23.15 0.698