Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2g1n 1IG Renin 3.4.23.15

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2g1n 1IGRenin 3.4.23.15 1.010
2i4q UA4Renin 3.4.23.15 0.820
2g1r 3IGRenin 3.4.23.15 0.817
2g1y 5IGRenin 3.4.23.15 0.789
2g1o 2IGRenin 3.4.23.15 0.770
2iko 7IGRenin 3.4.23.15 0.767
2g22 6IGRenin 3.4.23.15 0.757
2g21 L1BRenin 3.4.23.15 0.749
2g1s 4IGRenin 3.4.23.15 0.748
2iku LIYRenin 3.4.23.15 0.748
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2g24 7IGRenin 3.4.23.15 0.736