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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2fyc GDU Beta-1,4-galactosyltransferase 1 2.4.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2fyc GDUBeta-1,4-galactosyltransferase 1 2.4.1 1.330
1yro GDUBeta-1,4-galactosyltransferase 1 / 1.206
1oqm UD2Beta-1,4-galactosyltransferase 1 / 1.182
1o23 UPGBeta-1,4-galactosyltransferase 1 / 0.976
4ee3 UDHBeta-1,4-galactosyltransferase 1 / 0.961
5c48 URMHisto-blood group ABO system transferase / 0.696
5c1g GDUHisto-blood group ABO system transferase / 0.679
2ioa ADPBifunctional glutathionylspermidine synthetase/amidase / 0.678
3t9e ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.677
3uqd ATPATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11 0.677
2io8 ADPBifunctional glutathionylspermidine synthetase/amidase / 0.675
5c3b URMHisto-blood group ABO system transferase / 0.669
5c8r UPGHisto-blood group ABO system transferase / 0.665
3v0m 5GWHisto-blood group ABO system transferase / 0.664
5c4c UPGHisto-blood group ABO system transferase / 0.663
4jl8 ADPAdenylate kinase / 0.660
3t9f ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.658
5c3a URMHisto-blood group ABO system transferase / 0.658
5c47 URMHisto-blood group ABO system transferase / 0.657
4jlb ADPAdenylate kinase / 0.653
1l8t ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.652
3dnt ATPSerine/threonine-protein kinase toxin HipA / 0.652