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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2fxf ACO Diamine acetyltransferase 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2fxf ACODiamine acetyltransferase 1 / 1.341
2b3v ACODiamine acetyltransferase 1 / 0.886
2bei ACODiamine acetyltransferase 2 2.3.1.57 0.860
2cy2 ACOProbable acetyltransferase / 0.834
1cjw COTSerotonin N-acetyltransferase / 0.816
1pua COAHAT A1 / 0.801
1ib1 COTSerotonin N-acetyltransferase / 0.788
1wwz ACOUncharacterized protein / 0.787
3exn ACOProbable acetyltransferase / 0.784
5kgj ACOPredicted acetyltransferase / 0.779
2q4v ACODiamine acetyltransferase 2 2.3.1.57 0.778
1bob ACOHistone acetyltransferase type B catalytic subunit / 0.777
2b58 COADiamine acetyltransferase 1 / 0.772
3bj7 COADiamine acetyltransferase 1 / 0.771
3bj8 COADiamine acetyltransferase 1 / 0.767
1qsm ACOHistone acetyltransferase HPA2 / 0.766
3f0a ACOSpermidine N(1)-acetyltransferase / 0.760
1kux CA3Serotonin N-acetyltransferase / 0.755
4xnh ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.755
2ozu ACOHistone acetyltransferase KAT6A / 0.752
4kub COAUncharacterized protein / 0.748
5kf1 ACOPredicted acetyltransferase / 0.747
1tiq COASpermidine/spermine N(1)-acetyltransferase / 0.743
3to6 LYS_CMCHistone acetyltransferase ESA1 / 0.742
1mj9 COAHistone acetyltransferase ESA1 / 0.741
2rc4 ACOHistone acetyltransferase KAT6A / 0.741
1mja COAHistone acetyltransferase ESA1 / 0.738
5kgh ACOPredicted acetyltransferase / 0.738
3k9u ACOSpermidine N(1)-acetyltransferase / 0.736
1m1d LYXHAT A1 / 0.733
1mjb ACOHistone acetyltransferase ESA1 / 0.730
1s3z COAAminoglycoside N(6')-acetyltransferase type 1 / 0.730
4r3k COAN-alpha-acetyltransferase 2.3.1 0.730
4ag7 COAGlucosamine 6-phosphate N-acetyltransferase / 0.727
5kf9 ACOPredicted acetyltransferase / 0.727
2prb COAAminoglycoside 6-N-acetyltransferase type Ib11 / 0.726
4ua3 COAN-alpha-acetyltransferase 40 2.3.1 0.726
1b87 ACOAac(6')-Ii protein / 0.725
4zm6 ACON-acetyl-beta-D glucosaminidase / 0.725
1s5k COAAminoglycoside N(6')-acetyltransferase type 1 / 0.724
2bue COAAAC(6')-Ib / 0.723
2fiw ACOGCN5-related N-acetyltransferase:Aminotransferase, class-II / 0.723
4b5o ACOAlpha-tubulin N-acetyltransferase 1 / 0.723
1kuv CA5Serotonin N-acetyltransferase / 0.721
1pu9 COAHAT A1 / 0.721
2vqy ACOAAC(6')-Ib / 0.721
3r1k COAN-acetyltransferase Eis / 0.721
5kf2 ACOPredicted acetyltransferase / 0.721
1m4i COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.720
1j4j ACOAcetyltransferase 2.3.1 0.719
1fy7 COAHistone acetyltransferase ESA1 / 0.718
1i12 ACOGlucosamine 6-phosphate N-acetyltransferase / 0.716
2cns ACORibosomal-protein-alanine acetyltransferase / 0.712
3mgd ACOPredicted acetyltransferase / 0.712
2vbq BSJAminoglycoside N(6')-acetyltransferase type 1 / 0.711
2y0m ACOHistone acetyltransferase KAT8 / 0.711
2qir COAAminoglycoside 6-N-acetyltransferase type Ib11 / 0.710
4psw COAHistone acetyltransferase type B catalytic subunit / 0.710
1bo4 COAAminoglycoside-(3)-N-acetyltransferase / 0.709
1kuy COTSerotonin N-acetyltransferase / 0.709
5h86 BCOHistone acetyltransferase KAT2A 2.3.1.48 0.709
5kf8 ACOPredicted acetyltransferase / 0.709
5kgp ACOPredicted acetyltransferase / 0.709
1qsr ACOHAT A1 / 0.706
2psw COAN-alpha-acetyltransferase 50 / 0.701
3d2p COAAmino-acid acetyltransferase / 0.697
5kf1 COAPredicted acetyltransferase / 0.696
1z4r ACOHistone acetyltransferase KAT2A 2.3.1.48 0.694
2giv ACOHistone acetyltransferase KAT8 / 0.693
2vxk COAGlucosamine 6-phosphate acetyltransferase, putative / 0.689
1m4d COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.688
1p0h COAMycothiol acetyltransferase 2.3.1.189 0.686
2zpa ACOtRNA(Met) cytidine acetyltransferase TmcA / 0.686
4jxr ACOAcetyltransferase / 0.685
4hkf ACOAlpha-tubulin N-acetyltransferase 1 / 0.682
1ghe ACOAcetyltransferase 2.3.1 0.680
1cm0 COAHistone acetyltransferase KAT2B 2.3.1.48 0.677
2jdc CAOProbable acetyltransferase / 0.677
2jdd ACOProbable acetyltransferase / 0.677
2ou2 ACOHistone acetyltransferase KAT5 / 0.677
2r8v ACOAmino-acid acetyltransferase / 0.676
1v0c ACOAAC(6')-Ib / 0.667
3f8k COAUncharacterized protein / 0.667
2vez ACOGlucosamine 6-phosphate acetyltransferase, putative / 0.664
3zj0 ACOPutative acetyltransferase OgpAT / 0.662
4r87 COASpermidine N(1)-acetyltransferase / 0.661
2bsw CAOProbable acetyltransferase / 0.658
4jwp ACOGCN5-related N-acetyltransferase / 0.658
5kf2 COAPredicted acetyltransferase / 0.657
4if5 ACOAlpha-tubulin N-acetyltransferase 1 / 0.655
1xvt COAL-carnitine CoA-transferase / 0.654
2a4n COAAac(6')-Ii protein / 0.654
3te4 ACODopamine N-acetyltransferase / 0.651
1l0c COTSerotonin N-acetyltransferase / 0.650