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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2fvc 888 Polyprotein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2fvc 888Polyprotein / 0.986
2giq NN2Genome polyprotein 2.7.7.48 0.877
3co9 3MSGenome polyprotein 2.7.7.48 0.795
3e51 N35Genome polyprotein 2.7.7.48 0.773
3bsa 1PDGenome polyprotein 2.7.7.48 0.771
3h98 B5PGenome polyprotein 2.7.7.48 0.750
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
3cde N3HGenome polyprotein 2.7.7.48 0.733
3cwj 321Genome polyprotein 2.7.7.48 0.729
3br9 DEYGenome polyprotein 2.7.7.48 0.720
3bsc 2PDGenome polyprotein 2.7.7.48 0.716
3gyn B42Genome polyprotein 2.7.7.48 0.703
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3g86 T18Genome polyprotein 2.7.7.48 0.654