Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2fum MIX Serine/threonine-protein kinase PknB 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2fum MIXSerine/threonine-protein kinase PknB 2.7.11.1 1.037
1yhs STUSerine/threonine-protein kinase pim-1 2.7.11.1 0.682
2xm9 LWHSerine/threonine-protein kinase Chk2 2.7.11.1 0.672
3ka0 MK3MAP kinase-activated protein kinase 2 2.7.11.1 0.668
3m8p 65BGag-Pol polyprotein 2.7.7.49 0.664
4mf0 29ZTyrosine-protein kinase ITK/TSK 2.7.10.2 0.662
3q9w EMOCasein kinase II subunit alpha 2.7.11.1 0.661
3bqc EMOCasein kinase II subunit alpha 2.7.11.1 0.659
3q9x EMOCasein kinase II subunit alpha 2.7.11.1 0.657
2ahc VNLChorismate pyruvate-lyase / 0.653
2zd1 T27Gag-Pol polyprotein 2.7.7.49 0.651