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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2fmo FAD 5,10-methylenetetrahydrofolate reductase 1.5.1.20

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2fmo FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.380
1zp3 FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.174
1zp4 FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.149
3fst FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.146
1b5t FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.143
3fsu FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.133
1zrq FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.078
1v93 FADMethylenetetrahydrofolate reductase / 1.064
1zpt FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.039
3apy FADMethylenetetrahydrofolate reductase / 0.831
1x0p FADTll0078 protein / 0.706
2g37 FADProline dehydrogenase / 0.687
4bca FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.662
3gfz FMNUncharacterized protein / 0.661
2j4d FADCryptochrome DASH, chloroplastic/mitochondrial / 0.660
4i6g FADCryptochrome-2 / 0.660
3gg1 FMNUncharacterized protein / 0.658
4yus FMNFamily 3 adenylate cyclase / 0.656
4gu5 FADCryptochrome-1 / 0.652