sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2fl2 | ADP | Kinesin-like protein KIF11 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.905 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.890 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.869 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.847 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.845 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.839 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.831 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.830 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.820 | |
| 4zca | ADP | Kinesin-like protein KIF11 | / | 0.805 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.798 | |
| 2q2z | ADP | Kinesin-like protein KIF11 | / | 0.798 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.797 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.787 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.787 | |
| 3k3b | ADP | Kinesin-like protein KIF11 | / | 0.783 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.782 | |
| 4ww0 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.782 | |
| 4dsu | GDP | GTPase KRas | / | 0.781 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.776 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.775 | |
| 4a51 | ADP | Kinesin-like protein KIF11 | / | 0.773 | |
| 3l1c | ADP | Protein claret segregational | / | 0.769 | |
| 2ce7 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.766 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.765 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.764 | |
| 4ma4 | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.764 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.762 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.760 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.759 | |
| 1k6m | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 | 2.7.1.105 | 0.751 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.750 | |
| 2fna | ADP | Uncharacterized protein | / | 0.750 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.749 | |
| 4l8g | GDP | GTPase KRas | / | 0.749 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.747 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.747 | |
| 4l9s | GDP | GTPase HRas | / | 0.746 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.745 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.744 | |
| 4q03 | GDP | GTPase KRas | / | 0.744 | |
| 4ql3 | GDP | GTPase KRas | / | 0.744 | |
| 4lrw | GDP | GTPase KRas | / | 0.743 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.742 | |
| 4wa7 | GDP | GTPase KRas | / | 0.742 | |
| 5cyo | GDP | Septin-9 | / | 0.741 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.740 | |
| 2i1v | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.740 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.739 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.739 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.738 | |
| 2eck | ADP | Adenylate kinase | / | 0.737 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.737 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.737 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.737 | |
| 1xmv | ADP | Protein RecA | / | 0.736 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.735 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.735 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.735 | |
| 3thy | ADP | DNA mismatch repair protein Msh2 | / | 0.735 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.735 | |
| 4dso | GSP | GTPase KRas | / | 0.735 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.735 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.734 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.734 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.734 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.733 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.733 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.733 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.733 | |
| 4lpk | GDP | GTPase KRas | / | 0.733 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.733 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 0.732 | |
| 4epw | GDP | GTPase KRas | / | 0.732 | |
| 5fl3 | ADP | Pili retraction protein PilT | / | 0.732 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.731 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.731 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.731 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.730 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.730 | |
| 3kud | GDP | GTPase HRas | / | 0.730 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.729 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.729 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.728 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.728 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.728 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.728 | |
| 2c5l | GTP | GTPase HRas | / | 0.726 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.725 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.725 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.725 | |
| 3ieu | GDP | GTPase Era | / | 0.725 | |
| 4epx | GDP | GTPase KRas | / | 0.725 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.723 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.723 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.723 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.723 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.723 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.722 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.722 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.721 | |
| 2zts | ADP | Uncharacterized protein | / | 0.721 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.721 | |
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.721 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.720 | |
| 4luc | GDP | GTPase KRas | / | 0.720 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.720 | |
| 2axn | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | / | 0.719 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.719 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.718 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.718 | |
| 2dr3 | ADP | UPF0273 protein PH0284 | / | 0.718 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.718 | |
| 4g0n | GNP | GTPase HRas | / | 0.718 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.718 | |
| 4d81 | ADP | AAA ATPase, central domain protein | / | 0.717 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.717 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.717 | |
| 5irn | ADP | Nucleotide binding oligomerization domain containing 2 | / | 0.717 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.716 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.716 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.716 | |
| 1n6m | ADP | Protein claret segregational | / | 0.715 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.714 | |
| 2ce2 | GDP | GTPase HRas | / | 0.714 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.714 | |
| 3ref | GDP | Rho family GTPase | / | 0.714 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.714 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.714 | |
| 4obe | GDP | GTPase KRas | / | 0.714 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.714 | |
| 2q2y | ADP | Kinesin-like protein KIF11 | / | 0.713 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.713 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.713 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.713 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.712 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.712 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.712 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.712 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.712 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.711 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.711 | |
| 1bif | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.710 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.710 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.710 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.710 | |
| 3k8y | GNP | GTPase HRas | / | 0.710 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.710 | |
| 4tl8 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.710 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.709 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.709 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.709 | |
| 3i3s | GNP | GTPase HRas | / | 0.709 | |
| 4tq9 | GDP | GTPase KRas | / | 0.709 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.708 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.708 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.708 | |
| 4tlb | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.708 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.708 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.707 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.707 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.707 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.706 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.705 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.705 | |
| 4q02 | GDP | GTPase KRas | / | 0.705 | |
| 4k81 | GTP | GTPase HRas | / | 0.704 | |
| 4xvr | GNP | GTPase HRas | / | 0.704 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.703 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.703 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.703 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.702 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 0.702 | |
| 4mkh | AP5 | Adenylate kinase | / | 0.702 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.701 | |
| 2rgg | GNP | GTPase HRas | / | 0.701 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 0.701 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.700 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.700 | |
| 2o8b | ADP | DNA mismatch repair protein Msh2 | / | 0.700 | |
| 2olq | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.700 | |
| 2pc9 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.700 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.700 | |
| 3pfi | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.700 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.700 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.699 | |
| 2cl6 | CAG | GTPase HRas | / | 0.699 | |
| 3nbx | ADP | ATPase RavA | 3.6.3 | 0.699 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 0.699 | |
| 4ldj | GDP | GTPase KRas | / | 0.699 | |
| 4mit | GTP | Rho-related protein racC | / | 0.699 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.698 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.698 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.698 | |
| 2rgb | GNP | GTPase HRas | / | 0.698 | |
| 2rge | GNP | GTPase HRas | / | 0.698 | |
| 3ddc | GNP | GTPase HRas | / | 0.698 | |
| 3lbh | GNP | GTPase HRas | / | 0.698 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.698 | |
| 4dlt | GNP | GTPase HRas | / | 0.698 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 0.698 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.698 | |
| 4ihq | ADP | Conserved Archaeal protein | / | 0.698 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 0.698 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.698 | |
| 1ake | AP5 | Adenylate kinase | / | 0.697 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.697 | |
| 2zrj | AGS | Protein RecA | / | 0.697 | |
| 3d8b | ADP | Fidgetin-like protein 1 | 3.6.4 | 0.697 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 0.697 | |
| 3lbn | GNP | GTPase HRas | / | 0.697 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.697 | |
| 3oiu | GNP | GTPase HRas | / | 0.697 | |
| 4dls | GNP | GTPase HRas | / | 0.697 | |
| 4dlv | GNP | GTPase HRas | / | 0.697 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.697 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.697 | |
| 4ymu | ATP | ABC-type polar amino acid transport system, ATPase component | / | 0.697 | |
| 1ht2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.696 | |
| 1svl | ADP | Large T antigen | 3.6.4 | 0.696 | |
| 3k9l | GNP | GTPase HRas | / | 0.696 | |
| 3oiw | GNP | GTPase HRas | / | 0.696 | |
| 3rs7 | GNP | GTPase HRas | / | 0.696 | |
| 4iei | ADP | Gene 2 protein | / | 0.696 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.696 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.695 | |
| 2vos | ADP | Folylpolyglutamate synthase | / | 0.695 | |
| 3oiv | GNP | GTPase HRas | / | 0.695 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.695 | |
| 4dlx | GNP | GTPase HRas | / | 0.695 | |
| 5b2z | GNP | GTPase HRas | / | 0.695 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.694 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.694 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.694 | |
| 3qbv | GDP | Cell division control protein 42 homolog | / | 0.694 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.694 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.694 | |
| 4dlz | GNP | GTPase HRas | / | 0.694 | |
| 4ike | ADP | Adenylate kinase | / | 0.694 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.693 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.693 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.693 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.693 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.692 | |
| 4iok | ADP | Formate--tetrahydrofolate ligase | / | 0.692 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.691 | |
| 3tgp | GNP | GTPase HRas | / | 0.691 | |
| 4mkf | AP5 | Adenylate kinase | / | 0.691 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.691 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.690 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.690 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.690 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 0.690 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.690 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.690 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.690 | |
| 4xvq | GNP | GTPase HRas | / | 0.690 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.689 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.689 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.689 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.689 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.689 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.689 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.688 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.688 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.688 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.688 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.688 | |
| 4x8o | AP5 | Adenylate kinase | / | 0.688 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.688 | |
| 5ftc | ADP | TPR domain protein | / | 0.688 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.687 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.687 | |
| 2zro | ADP | Protein RecA | / | 0.687 | |
| 4jlo | ADP | Adenylate kinase | / | 0.687 | |
| 4lv6 | GDP | GTPase KRas | / | 0.687 | |
| 1s3s | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.686 | |
| 2d4h | 5GP | Guanylate-binding protein 1 | / | 0.686 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.686 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.686 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.686 | |
| 4tyq | AP5 | Adenylate kinase | / | 0.686 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 0.685 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.685 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.685 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.685 | |
| 3oes | GNP | GTPase RhebL1 | / | 0.685 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.685 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.685 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.684 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.684 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.684 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.684 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 0.684 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.684 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.683 | |
| 1sxj | ADP | Replication factor C subunit 5 | / | 0.683 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.683 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.683 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.683 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.683 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.683 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.682 | |
| 1um8 | ADP | ATP-dependent Clp protease ATP-binding subunit ClpX | / | 0.682 | |
| 3ea0 | ATP | ATPase, ParA family | / | 0.682 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.682 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.681 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.681 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.681 | |
| 4guk | P2G | Neuronal calcium sensor 1 | / | 0.681 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 0.681 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 0.680 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.680 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.679 | |
| 1xd9 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.679 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.679 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.679 | |
| 5bn3 | ADP | NEQ263 | / | 0.679 | |
| 1sxj | AGS | Replication factor C subunit 1 | / | 0.678 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.678 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.678 | |
| 2iut | AGS | DNA translocase FtsK | / | 0.678 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.678 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 0.677 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.676 | |
| 2ax4 | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 | 2.7.1.25 | 0.676 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.676 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.676 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.676 | |
| 3ftq | GNP | Septin-2 | / | 0.675 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.675 | |
| 1ank | ANP | Adenylate kinase | / | 0.674 | |
| 4dsn | GCP | GTPase KRas | / | 0.674 | |
| 4dvg | GSP | Rho family GTPase | / | 0.674 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.674 | |
| 4nyi | GNP | GTPase HRas | / | 0.674 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.674 | |
| 4qbg | AP5 | Adenylate kinase | / | 0.674 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.674 | |
| 1zio | AP5 | Adenylate kinase | / | 0.673 | |
| 2vor | ACP | Folylpolyglutamate synthase | / | 0.673 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.672 | |
| 3zl8 | ADP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.672 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.672 | |
| 4wpu | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.672 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.671 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.671 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.670 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.670 | |
| 3qpv | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.670 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.670 | |
| 4jky | ADP | Adenylate kinase | / | 0.670 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.670 | |
| 4jld | ADP | Adenylate kinase | / | 0.670 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.669 | |
| 1xkv | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.669 | |
| 1mez | GDP | Adenylosuccinate synthetase isozyme 1 | / | 0.668 | |
| 1nly | AGS | Cag alpha | / | 0.668 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.668 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.668 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.668 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.668 | |
| 3dyl | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.667 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.667 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.666 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.666 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.666 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.664 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.664 | |
| 2dft | ADP | Shikimate kinase | 2.7.1.71 | 0.664 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.664 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.664 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.664 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.664 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.663 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.663 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.662 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.662 | |
| 2v57 | PRL | TetR family transcriptional regulator | / | 0.661 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.661 | |
| 4cvm | ANP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.661 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.661 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.660 | |
| 1h8h | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.659 | |
| 1h8h | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.659 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.659 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 0.659 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.658 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.657 | |
| 1m67 | BOA | Glycerol-3-phosphate dehydrogenase [NAD(+)], glycosomal | 1.1.1.8 | 0.657 | |
| 1njf | ADP | DNA polymerase III subunit tau | 2.7.7.7 | 0.657 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.656 | |
| 1piw | NAP | NADP-dependent alcohol dehydrogenase 6 | 1.1.1.2 | 0.656 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.656 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.655 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.654 | |
| 2gyw | OBI | Acetylcholinesterase | 3.1.1.7 | 0.654 | |
| 3bxz | ADP | Protein translocase subunit SecA | / | 0.654 | |
| 3sop | GDP | Neuronal-specific septin-3 | / | 0.654 | |
| 1cf2 | NAP | Glyceraldehyde-3-phosphate dehydrogenase | / | 0.653 | |
| 1xms | ANP | Protein RecA | / | 0.653 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.653 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 0.653 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.653 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.652 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 0.652 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.652 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.652 | |
| 4yer | ADP | Antibiotic ABC transporter, ATP-binding protein, putative | / | 0.652 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.651 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.651 | |
| 2ybu | CX9 | Acidic mammalian chitinase | 3.2.1.14 | 0.651 | |
| 2zrf | DTP | Protein RecA | / | 0.651 | |
| 3cf0 | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.651 | |
| 3dys | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.651 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.651 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.651 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.650 | |
| 4i1v | ADP | Dephospho-CoA kinase | / | 0.650 |