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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2fhn BNI Avidin-related protein 4/5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2fhn BNIAvidin-related protein 4/5 / 1.228
2fhl BNIAvidin-related protein 4/5 / 1.121
1y52 BTNAvidin-related protein 4/5 / 1.000
4bcs BTNAvidin-related protein 4/5 / 0.986
2uyw BTNAvd protein / 0.938
1i9h BNIStreptavidin / 0.897
2rte BTNStreptavidin / 0.882
2izf BTNStreptavidin / 0.878
2izh BTNStreptavidin / 0.878
2y3f BTNStreptavidin / 0.878
2izg BTNStreptavidin / 0.873
2rtd BTNStreptavidin / 0.872
2rtf BTNStreptavidin / 0.872
4gda BTNStreptavidin / 0.869
3ry2 BTNStreptavidin / 0.867
1lcw SHMStreptavidin / 0.865
4dne DTBStreptavidin / 0.863
2rtg BTNStreptavidin / 0.859
3wyp BSOStreptavidin / 0.851
1swe BTNStreptavidin / 0.845
2izj BTNStreptavidin / 0.845
3wyq BTNStreptavidin / 0.845
3vhi VHIAvidin / 0.842
1nqm BTNStreptavidin / 0.841
2izi BTNStreptavidin / 0.839
3wzn BTNStreptavidin / 0.838
1n43 BTNStreptavidin / 0.834
1n9m BTNStreptavidin / 0.833
1mk5 BTNStreptavidin / 0.830
4bj8 BTNAvidin / 0.826
2zsc BTNTamavidin2 / 0.823
1rxh BNIStreptavidin / 0.818
3ew2 BTNHypothetical conserved protein / 0.818
1stp BTNStreptavidin / 0.814
2uz2 BTNAvd protein / 0.811
4gd9 BTNStreptavidin / 0.804
3rdo BTNStreptavidin / 0.798
4bx7 B4FStreptavidin / 0.797
4yvb BTNStreptavidin / 0.795
1luq BTNStreptavidin / 0.794
3t2w BTNAvidin/streptavidin / 0.788
1swt BTNStreptavidin / 0.787
1df8 BTNStreptavidin / 0.775
4z28 BTNHoefavidin / 0.775
1swr BTNStreptavidin / 0.769
1lcz BH7Streptavidin / 0.767
1mep BTNStreptavidin / 0.766
2rtp IMIStreptavidin / 0.765
1rxj BNIStreptavidin / 0.761
1swp BTNStreptavidin / 0.759
2jgs BTNAvidin / 0.750
2rtm IMIStreptavidin / 0.746
1swg BTNStreptavidin / 0.745
1swp BTQStreptavidin / 0.737
2rto IMIStreptavidin / 0.736
1nc9 IMIStreptavidin / 0.729
4ggz BTNBll1558 protein / 0.715
1swn BTNStreptavidin / 0.710
1swd BTNStreptavidin / 0.702
2rtq IMIStreptavidin / 0.700
3vhm NPKAvidin / 0.700
2c4i BTNAvidin / 0.697
4dve BTNBiotin transporter BioY / 0.678
4c2x NHWGlycylpeptide N-tetradecanoyltransferase 2 / 0.669
2rtl IMIStreptavidin / 0.667
2rti GLLStreptavidin / 0.664
2rtr IMIStreptavidin / 0.658
2rtn IMIStreptavidin / 0.653