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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2fhl BNI Avidin-related protein 4/5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2fhl BNIAvidin-related protein 4/5 / 1.128
2fhn BNIAvidin-related protein 4/5 / 1.121
1y52 BTNAvidin-related protein 4/5 / 1.003
4bcs BTNAvidin-related protein 4/5 / 0.994
2uyw BTNAvd protein / 0.925
2izh BTNStreptavidin / 0.894
2rte BTNStreptavidin / 0.885
2izf BTNStreptavidin / 0.880
2y3f BTNStreptavidin / 0.880
2izg BTNStreptavidin / 0.875
2rtf BTNStreptavidin / 0.874
4gda BTNStreptavidin / 0.871
3vgw NVZAvidin / 0.870
2rtd BTNStreptavidin / 0.861
1i9h BNIStreptavidin / 0.860
3ry2 BTNStreptavidin / 0.855
1lcw SHMStreptavidin / 0.853
3wyp BSOStreptavidin / 0.853
3wyq BTNStreptavidin / 0.852
4dne DTBStreptavidin / 0.850
2rtg BTNStreptavidin / 0.847
1nqm BTNStreptavidin / 0.844
3vhi VHIAvidin / 0.843
3wzn BTNStreptavidin / 0.839
1n43 BTNStreptavidin / 0.835
1n9m BTNStreptavidin / 0.835
1mk5 BTNStreptavidin / 0.832
1swe BTNStreptavidin / 0.832
2izj BTNStreptavidin / 0.832
2zsc BTNTamavidin2 / 0.830
4bj8 BTNAvidin / 0.828
2izi BTNStreptavidin / 0.827
3ew2 BTNHypothetical conserved protein / 0.824
1stp BTNStreptavidin / 0.817
2uz2 BTNAvd protein / 0.812
4gd9 BTNStreptavidin / 0.807
3rdo BTNStreptavidin / 0.800
1luq BTNStreptavidin / 0.796
3t2w BTNAvidin/streptavidin / 0.792
1ij8 BNIAvidin / 0.790
4yvb BTNStreptavidin / 0.783
3rdq DTBStreptavidin / 0.779
1ndj BTNStreptavidin / 0.778
1df8 BTNStreptavidin / 0.777
1swn BTNStreptavidin / 0.774
1swt BTNStreptavidin / 0.774
4bx7 B4FStreptavidin / 0.769
1mep BTNStreptavidin / 0.768
1rxh BNIStreptavidin / 0.767
1swr BTNStreptavidin / 0.767
2rtp IMIStreptavidin / 0.766
4z28 BTNHoefavidin / 0.763
1swp BTNStreptavidin / 0.760
2jgs BTNAvidin / 0.752
1lcz BH7Streptavidin / 0.747
1swg BTNStreptavidin / 0.747
1rxj BNIStreptavidin / 0.746
2rtm IMIStreptavidin / 0.746
4ggz BTNBll1558 protein / 0.736
2avi BTNAvidin / 0.722
1swp BTQStreptavidin / 0.709
1swd BTNStreptavidin / 0.705
3vhm NPKAvidin / 0.701
2c4i BTNAvidin / 0.694
4dve BTNBiotin transporter BioY / 0.678
2rti GLLStreptavidin / 0.673
2rtn IMIStreptavidin / 0.670
2rtl IMIStreptavidin / 0.667
2nmt NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.661
2rtk GLLStreptavidin / 0.652
2yne NHWGlycylpeptide N-tetradecanoyltransferase / 0.650