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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2f02 ATP Tagatose-6-phosphate kinase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2f02 ATPTagatose-6-phosphate kinase / 0.951
3uqd ADPATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11 0.766
3ump ATPATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11 0.704
3uqd ATPATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11 0.688
3umo ATPATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11 0.670
3ih0 ANPUncharacterized sugar kinase PH1459 2.7.1 0.660
4xf7 ACPCarbohydrate/pyrimidine kinase, PfkB family / 0.654