Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ex1 C5P Alpha-2,3/2,6-sialyltransferase/sialidase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ex1 C5PAlpha-2,3/2,6-sialyltransferase/sialidase / 1.012
2ilv C5PAlpha-2,3/2,6-sialyltransferase/sialidase / 0.980
2iib C5PAlpha-2,3/2,6-sialyltransferase/sialidase / 0.902
2ii6 C5PAlpha-2,3/2,6-sialyltransferase/sialidase / 0.689
2eka SAHDiphthine synthase / 0.660
2aa0 MTPAdenosine kinase 2.7.1.20 0.657
4o6m C5PUncharacterized protein / 0.657
1gqy ACPUDP-N-acetylmuramate--L-alanine ligase 6.3.2.8 0.654
3r6s CMPCRP-like cAMP-activated global transcriptional regulator / 0.654
4ehy ADPTetraacyldisaccharide 4'-kinase / 0.653
5c40 ACPRibokinase / 0.653
1cgp CMPcAMP-activated global transcriptional regulator CRP / 0.652
2ejz SAHDiphthine synthase / 0.650