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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ewp TXF Estrogen-related receptor gamma

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ewp TXFEstrogen-related receptor gamma / 1.314
2gpu OHTEstrogen-related receptor gamma / 1.084
1s9q OHTEstrogen-related receptor gamma / 0.947
2p7z OHTEstrogen-related receptor gamma / 0.892
2fsz OHTEstrogen receptor beta / 0.818
2gpv OHTEstrogen-related receptor gamma / 0.796
2bj4 OHTEstrogen receptor / 0.779
2jf9 OHTEstrogen receptor / 0.754
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3ert OHTEstrogen receptor / 0.726
1xqc AEJEstrogen receptor / 0.712
1uom PTIEstrogen receptor / 0.687