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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2esd NAP NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 1.2.1.9

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2esd NAPNADP-dependent glyceraldehyde-3-phosphate dehydrogenase 1.2.1.9 1.020
1uxu NAPNAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase / 0.755
2qe0 NAPNADP-dependent glyceraldehyde-3-phosphate dehydrogenase 1.2.1.9 0.731
3rhh NAPNADP-dependent glyceraldehyde-3-phosphate dehydrogenase / 0.696
2euh NAPNADP-dependent glyceraldehyde-3-phosphate dehydrogenase 1.2.1.9 0.687
3rhd NAPLactaldehyde dehydrogenase 1.2.1.22 0.686
4itb NDPSuccinate-semialdehyde dehydrogenase / 0.684