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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2eni SAH Diphthine synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2eni SAHDiphthine synthase / 1.108
2ek7 SAHDiphthine synthase / 1.102
2p9d SAHDiphthine synthase / 1.102
2p6k SAHDiphthine synthase / 1.101
2ele SAHDiphthine synthase / 1.099
2dxx SAHDiphthine synthase / 1.098
2e4n SAHDiphthine synthase / 1.098
2pb5 SAHDiphthine synthase / 1.097
2e8r SAHDiphthine synthase / 1.096
2ek3 SAHDiphthine synthase / 1.095
2el3 SAHDiphthine synthase / 1.095
2pck SAHDiphthine synthase / 1.095
2emr SAHDiphthine synthase / 1.094
2pcg SAHDiphthine synthase / 1.094
2e8s SAHDiphthine synthase / 1.093
2eh4 SAHDiphthine synthase / 1.093
2ek4 SAHDiphthine synthase / 1.093
2en5 SAHDiphthine synthase / 1.093
2eka SAHDiphthine synthase / 1.092
2p6d SAHDiphthine synthase / 1.089
2p6l SAHDiphthine synthase / 1.085
2e08 SAHDiphthine synthase / 1.083
2owk SAHDiphthine synthase / 1.083
2eh5 SAHDiphthine synthase / 1.082
2pcm SAHDiphthine synthase / 1.082
2p6i SAHDiphthine synthase / 1.081
2dv5 SAHDiphthine synthase / 1.080
2pb6 SAHDiphthine synthase / 1.080
2dxw SAHDiphthine synthase / 1.079
2p5f SAHDiphthine synthase / 1.079
2e17 SAHDiphthine synthase / 1.077
2pca SAHDiphthine synthase / 1.076
2dv3 SAHDiphthine synthase / 1.075
2ek2 SAHDiphthine synthase / 1.074
2p5c SAHDiphthine synthase / 1.069
2dv4 SAHDiphthine synthase / 1.065
2eh2 SAHDiphthine synthase / 1.065
2ejj SAHDiphthine synthase / 1.065
2emu SAHDiphthine synthase / 1.065
2dv7 SAHDiphthine synthase / 1.062
2dxv SAHDiphthine synthase / 1.062
2e07 SAHDiphthine synthase / 1.062
2e16 SAHDiphthine synthase / 1.062
2e7r SAHDiphthine synthase / 1.062
2egb SAHDiphthine synthase / 1.062
2ejk SAHDiphthine synthase / 1.062
2owu SAHDiphthine synthase / 1.062
2ed5 SAHDiphthine synthase / 1.061
2egl SAHDiphthine synthase / 1.061
2ehl SAHDiphthine synthase / 1.061
2z6r SAHDiphthine synthase / 1.061
2dsg SAHDiphthine synthase / 1.060
2e15 SAHDiphthine synthase / 1.060
2dsh SAHDiphthine synthase / 1.059
2pb4 SAHDiphthine synthase / 1.058
2eeq SAHDiphthine synthase / 1.057
2egs SAHDiphthine synthase / 1.057
2eld SAHDiphthine synthase / 1.056
2el0 SAHDiphthine synthase / 1.055
2dek SAHDiphthine synthase / 1.047
2e8q SAHDiphthine synthase / 1.044
2pch SAHDiphthine synthase / 1.042
2dsi SAHDiphthine synthase / 1.030
2hut SAHDiphthine synthase / 1.027
2owg SAHDiphthine synthase / 1.026
2huq SAHDiphthine synthase / 1.023
2huv SAHDiphthine synthase / 1.020
2owv SAHDiphthine synthase / 1.018
2e8h SAHDiphthine synthase / 1.013
2p2x SAHDiphthine synthase / 0.994
1wng SAHDiphthine synthase / 0.989
1vce SAHDiphthine synthase / 0.973
2pci SAHDiphthine synthase / 0.958
2hux SAHDiphthine synthase / 0.940
2hr8 SAHDiphthine synthase / 0.872
2ejz SAHDiphthine synthase / 0.802
2owf SAHDiphthine synthase / 0.757
2e0n SAHPrecorrin-2 C20-methyltransferase / 0.717
2ed3 SAHDiphthine synthase / 0.708
1cbf SAHCobalt-precorrin-4 C(11)-methyltransferase 2.1.1.271 0.694
1s4d SAHUroporphyrinogen-III C-methyltransferase 2.1.1.107 0.688
1jgt APCCarboxyethyl-arginine beta-lactam-synthase 6.3.3.4 0.685
2zvb SAHPrecorrin-3 C17-methyltransferase / 0.677
3s3t ATPUniversal stress protein / 0.672
2hma SAMtRNA-specific 2-thiouridylase MnmA / 0.669
4rr8 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.668
5a7y SAHtRNA (adenine(9)-N1)-methyltransferase 2.1.1.218 0.665
4oa9 ANPProtein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1 0.663
4oav ACP2-5A-dependent ribonuclease 3.1.26 0.661
3nd1 SAHPrecorrin-6A synthase (Deacetylating) / 0.656
3ndc SAHPrecorrin-4 C(11)-methyltransferase 2.1.1.133 0.656
2zvc SAHPrecorrin-3 C17-methyltransferase / 0.652