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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2emu SAH Diphthine synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2emu SAHDiphthine synthase / 1.107
2p6l SAHDiphthine synthase / 1.098
2pb6 SAHDiphthine synthase / 1.096
2e8r SAHDiphthine synthase / 1.093
2p6k SAHDiphthine synthase / 1.083
2pb4 SAHDiphthine synthase / 1.077
2dv5 SAHDiphthine synthase / 1.076
2pcg SAHDiphthine synthase / 1.072
2en5 SAHDiphthine synthase / 1.071
2ek7 SAHDiphthine synthase / 1.065
2eni SAHDiphthine synthase / 1.065
2e16 SAHDiphthine synthase / 1.063
2dv4 SAHDiphthine synthase / 1.062
2dxx SAHDiphthine synthase / 1.062
2e08 SAHDiphthine synthase / 1.062
2pck SAHDiphthine synthase / 1.062
2e17 SAHDiphthine synthase / 1.061
2e4n SAHDiphthine synthase / 1.061
2owk SAHDiphthine synthase / 1.061
2pb5 SAHDiphthine synthase / 1.060
2ejk SAHDiphthine synthase / 1.059
2dsg SAHDiphthine synthase / 1.058
2dsi SAHDiphthine synthase / 1.058
2e15 SAHDiphthine synthase / 1.058
2eh5 SAHDiphthine synthase / 1.058
2dsh SAHDiphthine synthase / 1.057
2eh4 SAHDiphthine synthase / 1.056
2eld SAHDiphthine synthase / 1.055
2dv3 SAHDiphthine synthase / 1.054
2ed5 SAHDiphthine synthase / 1.054
2eeq SAHDiphthine synthase / 1.054
2pca SAHDiphthine synthase / 1.053
2owg SAHDiphthine synthase / 1.051
2p9d SAHDiphthine synthase / 1.049
2ek3 SAHDiphthine synthase / 1.045
2p6d SAHDiphthine synthase / 1.044
2dxw SAHDiphthine synthase / 1.043
2el3 SAHDiphthine synthase / 1.043
2e8s SAHDiphthine synthase / 1.042
2ek4 SAHDiphthine synthase / 1.042
2p5f SAHDiphthine synthase / 1.042
2e7r SAHDiphthine synthase / 1.041
2egl SAHDiphthine synthase / 1.041
2dv7 SAHDiphthine synthase / 1.040
2dxv SAHDiphthine synthase / 1.040
2e07 SAHDiphthine synthase / 1.040
2egb SAHDiphthine synthase / 1.040
2p5c SAHDiphthine synthase / 1.040
2eka SAHDiphthine synthase / 1.039
2ehl SAHDiphthine synthase / 1.038
2pch SAHDiphthine synthase / 1.038
2emr SAHDiphthine synthase / 1.036
2egs SAHDiphthine synthase / 1.035
1wng SAHDiphthine synthase / 1.032
2ele SAHDiphthine synthase / 1.030
2p6i SAHDiphthine synthase / 1.028
2z6r SAHDiphthine synthase / 1.023
2dek SAHDiphthine synthase / 1.020
2el0 SAHDiphthine synthase / 1.019
2owu SAHDiphthine synthase / 1.019
1vce SAHDiphthine synthase / 1.018
2ek2 SAHDiphthine synthase / 1.016
2pcm SAHDiphthine synthase / 1.015
2eh2 SAHDiphthine synthase / 1.012
2e8q SAHDiphthine synthase / 1.007
2huv SAHDiphthine synthase / 1.006
2e8h SAHDiphthine synthase / 0.997
2ejj SAHDiphthine synthase / 0.993
2owv SAHDiphthine synthase / 0.987
2hut SAHDiphthine synthase / 0.983
2huq SAHDiphthine synthase / 0.982
2pci SAHDiphthine synthase / 0.954
2p2x SAHDiphthine synthase / 0.919
2hux SAHDiphthine synthase / 0.916
2ejz SAHDiphthine synthase / 0.873
2hr8 SAHDiphthine synthase / 0.818
2owf SAHDiphthine synthase / 0.750
4l2i FADElectron transfer flavoprotein alpha/beta-subunit / 0.727
4kpu FADElectron transfer flavoprotein alpha/beta-subunit / 0.692
1kor ANPArgininosuccinate synthase / 0.689
1jgt APCCarboxyethyl-arginine beta-lactam-synthase 6.3.3.4 0.686
2hma SAMtRNA-specific 2-thiouridylase MnmA / 0.684
3s3t ATPUniversal stress protein / 0.674
1kh3 ANPArgininosuccinate synthase / 0.673
1s4d SAHUroporphyrinogen-III C-methyltransferase 2.1.1.107 0.673
2qbu SAHPrecorrin-2 methyltransferase / 0.673
4xw4 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.672
2ybo SAHMethyltransferase / 0.670
4iai ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.670
1mjh ATPUniversal stress protein MJ0577 / 0.669
4ii5 ADPCyclin-dependent kinase 2 2.7.11.22 0.667
4ypa SAMHistone-lysine N-methyltransferase ASH1L 2.1.1.43 0.664
2e0n SAHPrecorrin-2 C20-methyltransferase / 0.663
2ed3 SAHDiphthine synthase / 0.662
4oa9 ANPProtein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1 0.662
3vpb ADPGlutamate--LysW ligase ArgX 6.3.2 0.661
4f9a ADPCell division cycle 7-related protein kinase 2.7.11.1 0.657
4xw6 ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.657
1mxi SAHtRNA (cytidine(34)-2'-O)-methyltransferase / 0.656
3nk7 SAM23S rRNA (adenosine(1067)-2'-O)-methyltransferase / 0.654
3oii SAHRibosomal RNA small subunit methyltransferase NEP1 / 0.650
4rr8 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.650