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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2eld SAH Diphthine synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2eld SAHDiphthine synthase / 1.102
2pca SAHDiphthine synthase / 1.097
2pcg SAHDiphthine synthase / 1.097
2eh4 SAHDiphthine synthase / 1.096
2ed5 SAHDiphthine synthase / 1.095
2emr SAHDiphthine synthase / 1.095
2pb5 SAHDiphthine synthase / 1.095
2eka SAHDiphthine synthase / 1.094
2en5 SAHDiphthine synthase / 1.094
2pb6 SAHDiphthine synthase / 1.094
2e8r SAHDiphthine synthase / 1.093
2eh5 SAHDiphthine synthase / 1.093
2el3 SAHDiphthine synthase / 1.092
2ejk SAHDiphthine synthase / 1.089
2ek4 SAHDiphthine synthase / 1.080
2p5f SAHDiphthine synthase / 1.079
2pch SAHDiphthine synthase / 1.078
2dv3 SAHDiphthine synthase / 1.077
2dxx SAHDiphthine synthase / 1.076
2e4n SAHDiphthine synthase / 1.076
2egs SAHDiphthine synthase / 1.076
2ek7 SAHDiphthine synthase / 1.076
2ele SAHDiphthine synthase / 1.076
2p9d SAHDiphthine synthase / 1.076
2e8h SAHDiphthine synthase / 1.075
2el0 SAHDiphthine synthase / 1.075
2ek2 SAHDiphthine synthase / 1.074
2owg SAHDiphthine synthase / 1.074
2p6l SAHDiphthine synthase / 1.074
1wng SAHDiphthine synthase / 1.073
2dv5 SAHDiphthine synthase / 1.073
2ek3 SAHDiphthine synthase / 1.073
2p6d SAHDiphthine synthase / 1.073
2p6k SAHDiphthine synthase / 1.073
2pb4 SAHDiphthine synthase / 1.073
2eeq SAHDiphthine synthase / 1.071
2p5c SAHDiphthine synthase / 1.070
2pck SAHDiphthine synthase / 1.059
2pcm SAHDiphthine synthase / 1.059
2dv7 SAHDiphthine synthase / 1.058
2e07 SAHDiphthine synthase / 1.058
2e7r SAHDiphthine synthase / 1.058
2egl SAHDiphthine synthase / 1.058
2dxv SAHDiphthine synthase / 1.057
2dxw SAHDiphthine synthase / 1.057
2e08 SAHDiphthine synthase / 1.057
2egb SAHDiphthine synthase / 1.057
2ehl SAHDiphthine synthase / 1.057
2dsg SAHDiphthine synthase / 1.056
2dsh SAHDiphthine synthase / 1.056
2e15 SAHDiphthine synthase / 1.056
2e16 SAHDiphthine synthase / 1.056
2eni SAHDiphthine synthase / 1.056
2e17 SAHDiphthine synthase / 1.055
2emu SAHDiphthine synthase / 1.055
2owk SAHDiphthine synthase / 1.055
1vce SAHDiphthine synthase / 1.053
2e8s SAHDiphthine synthase / 1.050
2owu SAHDiphthine synthase / 1.048
2eh2 SAHDiphthine synthase / 1.046
2dsi SAHDiphthine synthase / 1.043
2huv SAHDiphthine synthase / 1.043
2e8q SAHDiphthine synthase / 1.040
2dek SAHDiphthine synthase / 1.039
2owv SAHDiphthine synthase / 1.035
2dv4 SAHDiphthine synthase / 1.034
2hut SAHDiphthine synthase / 1.034
2p2x SAHDiphthine synthase / 1.030
2z6r SAHDiphthine synthase / 1.027
2ejj SAHDiphthine synthase / 1.026
2huq SAHDiphthine synthase / 1.024
2p6i SAHDiphthine synthase / 1.024
2hux SAHDiphthine synthase / 0.951
2pci SAHDiphthine synthase / 0.934
2hr8 SAHDiphthine synthase / 0.900
2owf SAHDiphthine synthase / 0.778
2ejz SAHDiphthine synthase / 0.771
2ed3 SAHDiphthine synthase / 0.701
2qbu SAHPrecorrin-2 methyltransferase / 0.701
1cbf SAHCobalt-precorrin-4 C(11)-methyltransferase 2.1.1.271 0.691
1jgt APCCarboxyethyl-arginine beta-lactam-synthase 6.3.3.4 0.681
2ha8 SAHProbable methyltransferase TARBP1 / 0.680
3ndc SAHPrecorrin-4 C(11)-methyltransferase 2.1.1.133 0.676
4x3l MTARNA 2'-O ribose methyltransferase / 0.675
1s4d SAHUroporphyrinogen-III C-methyltransferase 2.1.1.107 0.672
4rrm A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.672
4rr8 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.669
2zvc SAHPrecorrin-3 C17-methyltransferase / 0.664
4oa9 ANPProtein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1 0.660
1kp3 ATPArgininosuccinate synthase 6.3.4.5 0.659
3tw6 ADPPyruvate carboxylase / 0.658
4i3z ADPCyclin-dependent kinase 2 2.7.11.22 0.658
4ii5 ADPCyclin-dependent kinase 2 2.7.11.22 0.657
4rr7 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.656
1jbp ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.655
4xw4 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.654
3ab8 ATPUncharacterized protein / 0.653
2egv SAMRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.652
3i12 ADPD-alanine--D-alanine ligase A 6.3.2.4 0.650
4rrh A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.650