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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2el3 SAH Diphthine synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2el3 SAHDiphthine synthase / 1.126
2eh5 SAHDiphthine synthase / 1.118
2pb5 SAHDiphthine synthase / 1.116
2e8r SAHDiphthine synthase / 1.114
2eh4 SAHDiphthine synthase / 1.113
2en5 SAHDiphthine synthase / 1.113
2eka SAHDiphthine synthase / 1.112
2pb6 SAHDiphthine synthase / 1.112
2pcg SAHDiphthine synthase / 1.112
2e8s SAHDiphthine synthase / 1.111
2ek4 SAHDiphthine synthase / 1.111
2emr SAHDiphthine synthase / 1.111
2p6l SAHDiphthine synthase / 1.101
2p9d SAHDiphthine synthase / 1.099
2ek7 SAHDiphthine synthase / 1.098
2p5f SAHDiphthine synthase / 1.096
2ele SAHDiphthine synthase / 1.095
2eni SAHDiphthine synthase / 1.095
2p6k SAHDiphthine synthase / 1.095
2dxx SAHDiphthine synthase / 1.094
2e4n SAHDiphthine synthase / 1.094
2ed5 SAHDiphthine synthase / 1.094
2pck SAHDiphthine synthase / 1.094
2dv3 SAHDiphthine synthase / 1.093
2ek3 SAHDiphthine synthase / 1.093
2pca SAHDiphthine synthase / 1.093
2eld SAHDiphthine synthase / 1.092
2ek2 SAHDiphthine synthase / 1.090
2owg SAHDiphthine synthase / 1.090
2p6d SAHDiphthine synthase / 1.080
2dv5 SAHDiphthine synthase / 1.078
2owk SAHDiphthine synthase / 1.078
2p6i SAHDiphthine synthase / 1.078
2e08 SAHDiphthine synthase / 1.077
2e8h SAHDiphthine synthase / 1.076
2pb4 SAHDiphthine synthase / 1.076
2eeq SAHDiphthine synthase / 1.075
2egs SAHDiphthine synthase / 1.075
2eh2 SAHDiphthine synthase / 1.075
2pch SAHDiphthine synthase / 1.075
2dxw SAHDiphthine synthase / 1.074
2el0 SAHDiphthine synthase / 1.074
2e17 SAHDiphthine synthase / 1.073
1wng SAHDiphthine synthase / 1.071
2huv SAHDiphthine synthase / 1.071
2ejk SAHDiphthine synthase / 1.065
2pcm SAHDiphthine synthase / 1.065
2dek SAHDiphthine synthase / 1.062
2ejj SAHDiphthine synthase / 1.059
2owv SAHDiphthine synthase / 1.058
2e16 SAHDiphthine synthase / 1.057
2ehl SAHDiphthine synthase / 1.057
2dxv SAHDiphthine synthase / 1.056
2e07 SAHDiphthine synthase / 1.056
2e7r SAHDiphthine synthase / 1.056
2egb SAHDiphthine synthase / 1.056
2huq SAHDiphthine synthase / 1.056
2owu SAHDiphthine synthase / 1.056
2z6r SAHDiphthine synthase / 1.056
2egl SAHDiphthine synthase / 1.055
2dsg SAHDiphthine synthase / 1.054
2dsh SAHDiphthine synthase / 1.054
2dv7 SAHDiphthine synthase / 1.054
2e15 SAHDiphthine synthase / 1.054
2p2x SAHDiphthine synthase / 1.049
2e8q SAHDiphthine synthase / 1.048
2hut SAHDiphthine synthase / 1.048
2emu SAHDiphthine synthase / 1.043
2p5c SAHDiphthine synthase / 1.043
2dv4 SAHDiphthine synthase / 1.041
2dsi SAHDiphthine synthase / 1.029
1vce SAHDiphthine synthase / 1.025
2pci SAHDiphthine synthase / 1.024
2hux SAHDiphthine synthase / 0.976
2hr8 SAHDiphthine synthase / 0.875
2ejz SAHDiphthine synthase / 0.791
2owf SAHDiphthine synthase / 0.787
2ybo SAHMethyltransferase / 0.704
3oii SAHRibosomal RNA small subunit methyltransferase NEP1 / 0.697
2e0n SAHPrecorrin-2 C20-methyltransferase / 0.688
2qbu SAHPrecorrin-2 methyltransferase / 0.688
2ed3 SAHDiphthine synthase / 0.686
1cbf SAHCobalt-precorrin-4 C(11)-methyltransferase 2.1.1.271 0.683
2ha8 SAHProbable methyltransferase TARBP1 / 0.683
3s3t ATPUniversal stress protein / 0.682
1jgt APCCarboxyethyl-arginine beta-lactam-synthase 6.3.3.4 0.680
1kh2 ATPArgininosuccinate synthase / 0.672
1kp3 ATPArgininosuccinate synthase 6.3.4.5 0.672
4rr7 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.668
4oau ADP2-5A-dependent ribonuclease 3.1.26 0.664
1s4d SAHUroporphyrinogen-III C-methyltransferase 2.1.1.107 0.663
4ii5 ADPCyclin-dependent kinase 2 2.7.11.22 0.662
5a7y SAHtRNA (adenine(9)-N1)-methyltransferase 2.1.1.218 0.662
4rrm A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.660
4i3z ADPCyclin-dependent kinase 2 2.7.11.22 0.659
4oa9 ANPProtein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1 0.658
3i12 ADPD-alanine--D-alanine ligase A 6.3.2.4 0.656
3ndc SAHPrecorrin-4 C(11)-methyltransferase 2.1.1.133 0.656
4xw5 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.655
2b9i ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.654
4rrb A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.654
3zu0 A12NAD 5'-nucleotidase 3.1.3.5 0.651
4rr6 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.651
4xw6 ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.650