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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2el0 SAH Diphthine synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2el0 SAHDiphthine synthase / 1.102
2e07 SAHDiphthine synthase / 1.078
2e7r SAHDiphthine synthase / 1.078
2egb SAHDiphthine synthase / 1.078
2egs SAHDiphthine synthase / 1.078
2dxw SAHDiphthine synthase / 1.077
2e8s SAHDiphthine synthase / 1.077
2ed5 SAHDiphthine synthase / 1.077
2egl SAHDiphthine synthase / 1.077
2p5f SAHDiphthine synthase / 1.077
2pca SAHDiphthine synthase / 1.077
2z6r SAHDiphthine synthase / 1.077
2dv3 SAHDiphthine synthase / 1.076
2e15 SAHDiphthine synthase / 1.076
2eh4 SAHDiphthine synthase / 1.076
2eh5 SAHDiphthine synthase / 1.075
2ek4 SAHDiphthine synthase / 1.075
2eld SAHDiphthine synthase / 1.075
2emr SAHDiphthine synthase / 1.075
2en5 SAHDiphthine synthase / 1.075
2pb5 SAHDiphthine synthase / 1.075
2pcg SAHDiphthine synthase / 1.075
1wng SAHDiphthine synthase / 1.074
2e8r SAHDiphthine synthase / 1.074
2ek2 SAHDiphthine synthase / 1.074
2eka SAHDiphthine synthase / 1.074
2el3 SAHDiphthine synthase / 1.074
2dek SAHDiphthine synthase / 1.073
2dv5 SAHDiphthine synthase / 1.073
2eeq SAHDiphthine synthase / 1.073
2huq SAHDiphthine synthase / 1.073
2ejk SAHDiphthine synthase / 1.072
2pb6 SAHDiphthine synthase / 1.072
2p5c SAHDiphthine synthase / 1.066
2p6d SAHDiphthine synthase / 1.064
2ehl SAHDiphthine synthase / 1.063
2dxv SAHDiphthine synthase / 1.060
2pch SAHDiphthine synthase / 1.060
2dv7 SAHDiphthine synthase / 1.059
2eh2 SAHDiphthine synthase / 1.059
2dsg SAHDiphthine synthase / 1.058
2dxx SAHDiphthine synthase / 1.058
2ejj SAHDiphthine synthase / 1.058
2owk SAHDiphthine synthase / 1.058
2dsh SAHDiphthine synthase / 1.057
2e08 SAHDiphthine synthase / 1.057
2e4n SAHDiphthine synthase / 1.057
2ek7 SAHDiphthine synthase / 1.057
2huv SAHDiphthine synthase / 1.057
2e16 SAHDiphthine synthase / 1.056
2e17 SAHDiphthine synthase / 1.056
2ele SAHDiphthine synthase / 1.056
2p9d SAHDiphthine synthase / 1.056
2eni SAHDiphthine synthase / 1.055
2p6i SAHDiphthine synthase / 1.055
2p6k SAHDiphthine synthase / 1.055
2pcm SAHDiphthine synthase / 1.055
2e8h SAHDiphthine synthase / 1.054
2owg SAHDiphthine synthase / 1.054
2owu SAHDiphthine synthase / 1.054
2p6l SAHDiphthine synthase / 1.054
2pck SAHDiphthine synthase / 1.053
2pb4 SAHDiphthine synthase / 1.051
2dsi SAHDiphthine synthase / 1.043
2e8q SAHDiphthine synthase / 1.041
2hut SAHDiphthine synthase / 1.039
1vce SAHDiphthine synthase / 1.036
2dv4 SAHDiphthine synthase / 1.036
2ek3 SAHDiphthine synthase / 1.035
2owv SAHDiphthine synthase / 1.023
2emu SAHDiphthine synthase / 1.019
2p2x SAHDiphthine synthase / 1.019
2pci SAHDiphthine synthase / 1.007
2hux SAHDiphthine synthase / 0.947
2hr8 SAHDiphthine synthase / 0.873
2ejz SAHDiphthine synthase / 0.852
2owf SAHDiphthine synthase / 0.711
2ed3 SAHDiphthine synthase / 0.704
1s4d SAHUroporphyrinogen-III C-methyltransferase 2.1.1.107 0.683
2ha8 SAHProbable methyltransferase TARBP1 / 0.680
3s3t ATPUniversal stress protein / 0.678
4x3l MTARNA 2'-O ribose methyltransferase / 0.678
2qbu SAHPrecorrin-2 methyltransferase / 0.675
2b9i ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.674
1cbf SAHCobalt-precorrin-4 C(11)-methyltransferase 2.1.1.271 0.673
1j21 ATPArgininosuccinate synthase / 0.671
2zvc SAHPrecorrin-3 C17-methyltransferase / 0.667
1kor ANPArgininosuccinate synthase / 0.660
2ybo SAHMethyltransferase / 0.659
3ndc SAHPrecorrin-4 C(11)-methyltransferase 2.1.1.133 0.657
2bb3 SAHCobalamin biosynthesis precorrin-6Y methylase (CbiE) / 0.654
4rr6 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.653
4rrl A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.653
1kp2 ATPArgininosuccinate synthase 6.3.4.5 0.652
1s16 ANPDNA topoisomerase 4 subunit B / 0.651
1kh3 ANPArgininosuccinate synthase / 0.650
2e0n SAHPrecorrin-2 C20-methyltransferase / 0.650
4rr7 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.650