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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ek2 SAH Diphthine synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ek2 SAHDiphthine synthase / 1.102
2emr SAHDiphthine synthase / 1.094
2pca SAHDiphthine synthase / 1.094
2ed5 SAHDiphthine synthase / 1.093
2eh4 SAHDiphthine synthase / 1.093
2ek4 SAHDiphthine synthase / 1.093
2en5 SAHDiphthine synthase / 1.093
2p5f SAHDiphthine synthase / 1.093
2pcg SAHDiphthine synthase / 1.093
2e8s SAHDiphthine synthase / 1.092
2e8r SAHDiphthine synthase / 1.091
2eh5 SAHDiphthine synthase / 1.091
2el3 SAHDiphthine synthase / 1.090
2ejk SAHDiphthine synthase / 1.086
2pb5 SAHDiphthine synthase / 1.078
2eka SAHDiphthine synthase / 1.077
2dxx SAHDiphthine synthase / 1.075
2egs SAHDiphthine synthase / 1.075
2eh2 SAHDiphthine synthase / 1.075
2ele SAHDiphthine synthase / 1.075
2pch SAHDiphthine synthase / 1.075
1wng SAHDiphthine synthase / 1.074
2e4n SAHDiphthine synthase / 1.074
2ek7 SAHDiphthine synthase / 1.074
2el0 SAHDiphthine synthase / 1.074
2eld SAHDiphthine synthase / 1.074
2eni SAHDiphthine synthase / 1.074
2p9d SAHDiphthine synthase / 1.074
2pb6 SAHDiphthine synthase / 1.074
2dv3 SAHDiphthine synthase / 1.073
2eeq SAHDiphthine synthase / 1.072
2p6l SAHDiphthine synthase / 1.071
2dv5 SAHDiphthine synthase / 1.070
2owg SAHDiphthine synthase / 1.069
2ek3 SAHDiphthine synthase / 1.067
2e8h SAHDiphthine synthase / 1.060
2huv SAHDiphthine synthase / 1.059
2p6k SAHDiphthine synthase / 1.058
2dxv SAHDiphthine synthase / 1.057
2e07 SAHDiphthine synthase / 1.057
2e7r SAHDiphthine synthase / 1.057
2egb SAHDiphthine synthase / 1.057
2ehl SAHDiphthine synthase / 1.057
2pck SAHDiphthine synthase / 1.057
2z6r SAHDiphthine synthase / 1.057
2dv7 SAHDiphthine synthase / 1.056
2dxw SAHDiphthine synthase / 1.056
2e08 SAHDiphthine synthase / 1.056
2ejj SAHDiphthine synthase / 1.056
2dek SAHDiphthine synthase / 1.055
2dsg SAHDiphthine synthase / 1.055
2dsh SAHDiphthine synthase / 1.055
2e15 SAHDiphthine synthase / 1.055
2egl SAHDiphthine synthase / 1.055
2huq SAHDiphthine synthase / 1.055
2owk SAHDiphthine synthase / 1.055
2owu SAHDiphthine synthase / 1.055
2e17 SAHDiphthine synthase / 1.054
2e16 SAHDiphthine synthase / 1.053
2p6d SAHDiphthine synthase / 1.052
2p5c SAHDiphthine synthase / 1.049
2pb4 SAHDiphthine synthase / 1.048
2hut SAHDiphthine synthase / 1.040
2pcm SAHDiphthine synthase / 1.040
2p6i SAHDiphthine synthase / 1.039
2p2x SAHDiphthine synthase / 1.035
2owv SAHDiphthine synthase / 1.026
2e8q SAHDiphthine synthase / 1.023
1vce SAHDiphthine synthase / 1.021
2emu SAHDiphthine synthase / 1.016
2pci SAHDiphthine synthase / 1.010
2dsi SAHDiphthine synthase / 1.005
2dv4 SAHDiphthine synthase / 0.998
2hux SAHDiphthine synthase / 0.947
2hr8 SAHDiphthine synthase / 0.875
2ejz SAHDiphthine synthase / 0.798
2owf SAHDiphthine synthase / 0.736
2ed3 SAHDiphthine synthase / 0.719
2e0n SAHPrecorrin-2 C20-methyltransferase / 0.717
2ha8 SAHProbable methyltransferase TARBP1 / 0.688
2qbu SAHPrecorrin-2 methyltransferase / 0.677
4x3l MTARNA 2'-O ribose methyltransferase / 0.677
3ndc SAHPrecorrin-4 C(11)-methyltransferase 2.1.1.133 0.676
1s4d SAHUroporphyrinogen-III C-methyltransferase 2.1.1.107 0.673
2hma SAMtRNA-specific 2-thiouridylase MnmA / 0.671
1kh2 ATPArgininosuccinate synthase / 0.664
3nut SAHPrecorrin-3 methylase / 0.664
2wsi FADFAD synthase 2.7.7.2 0.663
3i12 ADPD-alanine--D-alanine ligase A 6.3.2.4 0.661
3tw6 ADPPyruvate carboxylase / 0.659
1kor ANPArgininosuccinate synthase / 0.657
4i3z ADPCyclin-dependent kinase 2 2.7.11.22 0.657
4ii5 ADPCyclin-dependent kinase 2 2.7.11.22 0.655
1id0 ANPSensor protein PhoQ 2.7.13.3 0.654
1j21 ATPArgininosuccinate synthase / 0.654
2egw SAHRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.654
4jl8 ADPAdenylate kinase / 0.653
2zvc SAHPrecorrin-3 C17-methyltransferase / 0.652
4rr7 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.651