Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ej2 PPE Branched-chain amino acid aminotransferase (IlvE)

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ej2 PPEBranched-chain amino acid aminotransferase (IlvE) / 1.001
1kt8 ILPBranched-chain-amino-acid aminotransferase, mitochondrial 2.6.1.42 0.785
3lqs PSZD-alanine aminotransferase 2.6.1.21 0.775
1daa PLPD-alanine aminotransferase 2.6.1.21 0.769
2daa DCSD-alanine aminotransferase 2.6.1.21 0.761
3daa PDDD-alanine aminotransferase 2.6.1.21 0.756
2abj PLPBranched-chain-amino-acid aminotransferase, cytosolic 2.6.1.42 0.741
4uug PXGBranched-chain amino acid aminotransferase, putative / 0.735
4cmf PXGUncharacterized protein / 0.732