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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2eix FAD NADH-cytochrome b5 reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2eix FADNADH-cytochrome b5 reductase / 1.560
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 1.042
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 1.005
1cqx FADFlavohemoprotein / 0.940
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.904
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.891
4fk8 FADFerredoxin--NADP reductase / 0.881
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.875
3qfc FADNADPH--cytochrome P450 reductase / 0.865
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.865
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.856
1amo FADNADPH--cytochrome P450 reductase / 0.854
3qft FADNADPH--cytochrome P450 reductase / 0.853
2vyq FADFerredoxin--NADP reductase 1.18.1.2 0.852
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.851
1ja1 FADNADPH--cytochrome P450 reductase / 0.851
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.851
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.850
2bgj FADNADPH:ferredoxin reductase / 0.850
3qfs FADNADPH--cytochrome P450 reductase / 0.850
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.848
3fpk FADFerredoxin-NADP reductase / 0.845
2vnj FADNADPH:ferredoxin reductase / 0.843
1gjr FADFerredoxin--NADP reductase 1.18.1.2 0.842
3qe2 FADNADPH--cytochrome P450 reductase / 0.841
4c43 FADFerredoxin--NADP reductase 1.18.1.2 0.841
3ojw FADNADPH--cytochrome P450 reductase / 0.837
3qfr FADNADPH--cytochrome P450 reductase / 0.833
4y9u FADNADPH--cytochrome P450 reductase / 0.833
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.831
1w35 FADFerredoxin--NADP reductase 1.18.1.2 0.830
1w34 FADFerredoxin--NADP reductase 1.18.1.2 0.829
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.827
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.825
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.825
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 0.825
4y7c FADNADPH--cytochrome P450 reductase / 0.823
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.822
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.817
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.815
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.813
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.812
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.812
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.812
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.812
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.808
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.807
1e62 FADFerredoxin--NADP reductase 1.18.1.2 0.805
1ja0 FADNADPH--cytochrome P450 reductase / 0.805
3vo2 FADFerredoxin--NADP reductase / 0.804
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.803
3ojx FADNADPH--cytochrome P450 reductase / 0.803
1que FADFerredoxin--NADP reductase 1.18.1.2 0.798
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.797
2bgi FADNADPH:ferredoxin reductase / 0.795
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.791
1j9z FADNADPH--cytochrome P450 reductase / 0.789
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.789
1e64 FADFerredoxin--NADP reductase 1.18.1.2 0.787
1gvh FADFlavohemoprotein / 0.787
1gaw FADFerredoxin / 0.785
1b2r FADFerredoxin--NADP reductase 1.18.1.2 0.784
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.783
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.783
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.782
2bf4 FADNADPH--cytochrome P450 reductase / 0.775
2bn4 FADNADPH--cytochrome P450 reductase / 0.771
2pia FMNPhthalate dioxygenase reductase / 0.770
2vnh FADNADPH:ferredoxin reductase / 0.767
4bpr FADFerredoxin--NADP reductase 1.18.1.2 0.767
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.760
2rc6 FADFerredoxin--NADP reductase / 0.760
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.751
4yau FADNADPH--cytochrome P450 reductase / 0.741
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.740
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.728
4yaf FADNADPH--cytochrome P450 reductase / 0.726
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.725
2rc5 FADFerredoxin--NADP reductase / 0.725
1gaq FADFerredoxin / 0.724
2vnk FADNADPH:ferredoxin reductase / 0.710
3w5u FADFerredoxin / 0.710
4y9r FADNADPH--cytochrome P450 reductase / 0.709
1cnf FADNitrate reductase [NADH] 1.7.1.1 0.708
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.704
2bpo FADNADPH--cytochrome P450 reductase / 0.703
2gpj FADSiderophore-interacting protein / 0.701
5cho FADFlavin reductase / 0.701
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.698
4yao FADNADPH--cytochrome P450 reductase / 0.695
4ybn FADFlavin-nucleotide-binding protein / 0.695
1sm4 FADFerredoxin--NADP reductase / 0.694
4f07 FADStyrene monooxygenase component 2 / 0.691
3crz FADFerredoxin--NADP+ reductase / 0.687
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.687
1v5e FADPyruvate oxidase / 0.685
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.685
2hq9 FADMll6688 protein / 0.684
1tj1 FADBifunctional protein PutA 1.5.5.2 0.679
4b4d FADFerredoxin-NADP reductase / 0.675
4hmx FMNPyridoxamine 5'-phosphate oxidase / 0.670
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.666
1usc FMNMonooxygenase / 0.664
1tll FADNitric oxide synthase, brain 1.14.13.39 0.663
3gd3 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.663
1rz0 FADPhenol 2-hydroxylase component B / 0.662
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.661
4k1x FADNADPH:ferredoxin reductase / 0.658
2e83 FMNFMN-binding protein / 0.657
4a33 MYAGlycylpeptide N-tetradecanoyltransferase / 0.657
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.656
1flm FMNFMN-binding protein / 0.656
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.656
1ci0 FMNPyridoxamine 5'-phosphate oxidase 1.4.3.5 0.651
4hia FMNLOV protein / 0.651
4eep FMNPhototropin-2 2.7.11.1 0.650