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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ed3 SAH Diphthine synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ed3 SAHDiphthine synthase / 0.973
2z6r SAHDiphthine synthase / 0.741
2p9d SAHDiphthine synthase / 0.728
2owg SAHDiphthine synthase / 0.726
2p6i SAHDiphthine synthase / 0.726
2p5c SAHDiphthine synthase / 0.725
2e07 SAHDiphthine synthase / 0.723
2hux SAHDiphthine synthase / 0.723
2pb6 SAHDiphthine synthase / 0.723
2dxx SAHDiphthine synthase / 0.722
2p6k SAHDiphthine synthase / 0.722
2pb5 SAHDiphthine synthase / 0.722
2e17 SAHDiphthine synthase / 0.721
2p6d SAHDiphthine synthase / 0.721
2hut SAHDiphthine synthase / 0.720
2ek2 SAHDiphthine synthase / 0.719
2p5f SAHDiphthine synthase / 0.719
2e8h SAHDiphthine synthase / 0.718
1wng SAHDiphthine synthase / 0.717
2ehl SAHDiphthine synthase / 0.712
2ele SAHDiphthine synthase / 0.712
2emr SAHDiphthine synthase / 0.712
2pca SAHDiphthine synthase / 0.712
2eh4 SAHDiphthine synthase / 0.711
2ek3 SAHDiphthine synthase / 0.711
2pcm SAHDiphthine synthase / 0.710
2ejz SAHDiphthine synthase / 0.709
2eni SAHDiphthine synthase / 0.708
2pck SAHDiphthine synthase / 0.707
2dsh SAHDiphthine synthase / 0.706
2dxv SAHDiphthine synthase / 0.706
2e08 SAHDiphthine synthase / 0.706
2e15 SAHDiphthine synthase / 0.706
2e7r SAHDiphthine synthase / 0.706
2ed5 SAHDiphthine synthase / 0.706
2egb SAHDiphthine synthase / 0.706
2eh2 SAHDiphthine synthase / 0.706
2dsg SAHDiphthine synthase / 0.705
2dxw SAHDiphthine synthase / 0.705
2e4n SAHDiphthine synthase / 0.705
2egs SAHDiphthine synthase / 0.705
2ejj SAHDiphthine synthase / 0.705
2ek4 SAHDiphthine synthase / 0.705
2ek7 SAHDiphthine synthase / 0.705
2eka SAHDiphthine synthase / 0.705
2en5 SAHDiphthine synthase / 0.705
2owk SAHDiphthine synthase / 0.705
2pcg SAHDiphthine synthase / 0.705
2dek SAHDiphthine synthase / 0.704
2el0 SAHDiphthine synthase / 0.704
2dv7 SAHDiphthine synthase / 0.702
2egl SAHDiphthine synthase / 0.701
2eld SAHDiphthine synthase / 0.701
2owu SAHDiphthine synthase / 0.701
2owv SAHDiphthine synthase / 0.701
2pch SAHDiphthine synthase / 0.700
2dv3 SAHDiphthine synthase / 0.699
2e8r SAHDiphthine synthase / 0.699
2owf SAHDiphthine synthase / 0.691
2p6l SAHDiphthine synthase / 0.691
2pci SAHDiphthine synthase / 0.691
2eh5 SAHDiphthine synthase / 0.690
2e8q SAHDiphthine synthase / 0.689
2huv SAHDiphthine synthase / 0.688
2huq SAHDiphthine synthase / 0.687
2el3 SAHDiphthine synthase / 0.686
2eeq SAHDiphthine synthase / 0.676
2p2x SAHDiphthine synthase / 0.666
2pb4 SAHDiphthine synthase / 0.663
2emu SAHDiphthine synthase / 0.662
2ybo SAHMethyltransferase / 0.661
2z08 ATPUniversal stress protein family / 0.660
3s87 ADPRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.657
2zvb SAHPrecorrin-3 C17-methyltransferase / 0.652