Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2e93 B29 Geranylgeranyl pyrophosphate synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2e93 B29Geranylgeranyl pyrophosphate synthase / 1.159
4dwb 0M7Farnesyl pyrophosphate synthase / 0.685
4nke RISFarnesyl pyrophosphate synthase 2.5.1.10 0.679
4ga3 4GAFarnesyl pyrophosphate synthase 2.5.1.10 0.673
4lfg IPEPutative geranyltranstransferase / 0.669
1ndc TYDNucleoside diphosphate kinase, cytosolic 2.7.4.6 0.658
5ero 210Fusicoccadiene synthase 2.5.1.29 0.658
1rqj IPEFarnesyl diphosphate synthase 2.5.1.10 0.652