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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2e91 ZOL Geranylgeranyl pyrophosphate synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2e91 ZOLGeranylgeranyl pyrophosphate synthase / 0.974
2e95 B75Geranylgeranyl pyrophosphate synthase / 0.832
2z7h GG3Geranylgeranyl pyrophosphate synthase / 0.824
2zev B71Geranylgeranyl pyrophosphate synthase / 0.790
2z52 H23Geranylgeranyl pyrophosphate synthase / 0.786
3ez3 ZOLFarnesyl pyrophosphate synthase, putative / 0.773
4kqs RISFarnesyl pyrophosphate synthase 2.5.1.10 0.773
1zw5 ZOLFarnesyl pyrophosphate synthase 2.5.1.10 0.760
2z4w 749Geranylgeranyl pyrophosphate synthase / 0.757
1jsz NDMCap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2.1.1.57 0.744
3ldw ZOLFarnesyl pyrophosphate synthase, putative / 0.743
1rqj RISFarnesyl diphosphate synthase 2.5.1.10 0.733
2z4y 252Geranylgeranyl pyrophosphate synthase / 0.731
4nke RISFarnesyl pyrophosphate synthase 2.5.1.10 0.721
2o1o RISPutative farnesyl pyrophosphate synthase / 0.716
4q23 RISFarnesyl pyrophosphate synthase 2.5.1.10 0.710
5erm 210Fusicoccadiene synthase 4.2.3.43 0.702
4h5d YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.686
4lfv YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.686
4h5e YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.685
4dem YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.684
4dxj 0M9Farnesyl pyrophosphate synthase / 0.676
3icz PB6Farnesyl pyrophosphate synthase / 0.674
3dyh 721Farnesyl pyrophosphate synthase / 0.673
1yv5 RISFarnesyl pyrophosphate synthase 2.5.1.10 0.672
2vor ACPFolylpolyglutamate synthase / 0.671
2opm NI9Farnesyl pyrophosphate synthase 2.5.1.10 0.670
3rye UNRFarnesyl pyrophosphate synthase 2.5.1.10 0.662
4l2x YL2Farnesyl pyrophosphate synthase 2.5.1.10 0.661
1c3x 8IGPurine nucleoside phosphorylase 2.4.2.1 0.660
2ofi ADK3-methyladenine DNA glycosylase I / 0.660
2vos ADPFolylpolyglutamate synthase / 0.659
2f94 BFQFarnesyl pyrophosphate synthase 2.5.1.10 0.657
3ryw K9HFarnesyl pyrophosphate synthase, putative / 0.656
3krf DSTGeranyl diphosphate synthase large subunit / 0.655
3ar4 ATPSarcoplasmic/endoplasmic reticulum calcium ATPase 1 3.6.3.8 0.653
4qbh AP5Adenylate kinase / 0.652
3egt 722Farnesyl pyrophosphate synthase / 0.651