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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2e8r SAH Diphthine synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2e8r SAHDiphthine synthase / 1.139
2pb6 SAHDiphthine synthase / 1.131
2p6l SAHDiphthine synthase / 1.116
2pb5 SAHDiphthine synthase / 1.116
2eh5 SAHDiphthine synthase / 1.115
2eh4 SAHDiphthine synthase / 1.114
2el3 SAHDiphthine synthase / 1.114
2p6k SAHDiphthine synthase / 1.114
2dv5 SAHDiphthine synthase / 1.113
2ek4 SAHDiphthine synthase / 1.113
2en5 SAHDiphthine synthase / 1.113
2pcg SAHDiphthine synthase / 1.113
2e8s SAHDiphthine synthase / 1.112
2eka SAHDiphthine synthase / 1.111
2emr SAHDiphthine synthase / 1.111
2pb4 SAHDiphthine synthase / 1.111
2p6d SAHDiphthine synthase / 1.109
2ek7 SAHDiphthine synthase / 1.099
2p9d SAHDiphthine synthase / 1.098
2eni SAHDiphthine synthase / 1.096
2p5f SAHDiphthine synthase / 1.096
2e4n SAHDiphthine synthase / 1.095
2pck SAHDiphthine synthase / 1.095
2pcm SAHDiphthine synthase / 1.095
2dv3 SAHDiphthine synthase / 1.094
2dxx SAHDiphthine synthase / 1.094
2ed5 SAHDiphthine synthase / 1.094
2eeq SAHDiphthine synthase / 1.094
2pca SAHDiphthine synthase / 1.094
2e17 SAHDiphthine synthase / 1.093
2eld SAHDiphthine synthase / 1.093
2ele SAHDiphthine synthase / 1.093
2emu SAHDiphthine synthase / 1.093
2ek3 SAHDiphthine synthase / 1.092
2ek2 SAHDiphthine synthase / 1.091
2owg SAHDiphthine synthase / 1.091
2ejk SAHDiphthine synthase / 1.090
2e8h SAHDiphthine synthase / 1.078
2owk SAHDiphthine synthase / 1.078
2e08 SAHDiphthine synthase / 1.077
2e16 SAHDiphthine synthase / 1.077
2p6i SAHDiphthine synthase / 1.077
2eh2 SAHDiphthine synthase / 1.076
2dv4 SAHDiphthine synthase / 1.075
2dxw SAHDiphthine synthase / 1.075
2egs SAHDiphthine synthase / 1.075
2pch SAHDiphthine synthase / 1.075
2dsg SAHDiphthine synthase / 1.074
2dsh SAHDiphthine synthase / 1.074
2e15 SAHDiphthine synthase / 1.074
2el0 SAHDiphthine synthase / 1.074
2huq SAHDiphthine synthase / 1.072
1wng SAHDiphthine synthase / 1.071
2huv SAHDiphthine synthase / 1.071
2pci SAHDiphthine synthase / 1.069
2dsi SAHDiphthine synthase / 1.063
2e8q SAHDiphthine synthase / 1.062
2ejj SAHDiphthine synthase / 1.060
2dek SAHDiphthine synthase / 1.058
2egb SAHDiphthine synthase / 1.057
2ehl SAHDiphthine synthase / 1.057
2p5c SAHDiphthine synthase / 1.057
2z6r SAHDiphthine synthase / 1.057
2dxv SAHDiphthine synthase / 1.056
2e07 SAHDiphthine synthase / 1.056
2e7r SAHDiphthine synthase / 1.056
2owu SAHDiphthine synthase / 1.056
2dv7 SAHDiphthine synthase / 1.055
2egl SAHDiphthine synthase / 1.055
2owv SAHDiphthine synthase / 1.052
2hut SAHDiphthine synthase / 1.048
2p2x SAHDiphthine synthase / 1.043
1vce SAHDiphthine synthase / 1.039
2hux SAHDiphthine synthase / 0.950
2hr8 SAHDiphthine synthase / 0.873
2ejz SAHDiphthine synthase / 0.852
2owf SAHDiphthine synthase / 0.758
2ed3 SAHDiphthine synthase / 0.699
2zvc SAHPrecorrin-3 C17-methyltransferase / 0.697
2ha8 SAHProbable methyltransferase TARBP1 / 0.681
3s3t ATPUniversal stress protein / 0.678
3ndc SAHPrecorrin-4 C(11)-methyltransferase 2.1.1.133 0.676
2ybo SAHMethyltransferase / 0.668
4rr8 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.667
3o7b SAHRibosomal RNA small subunit methyltransferase Nep1 / 0.665
2e0n SAHPrecorrin-2 C20-methyltransferase / 0.663
5a7y SAHtRNA (adenine(9)-N1)-methyltransferase 2.1.1.218 0.663
4i3z ADPCyclin-dependent kinase 2 2.7.11.22 0.658
4oa9 ANPProtein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1 0.658
4ii5 ADPCyclin-dependent kinase 2 2.7.11.22 0.655
4rrb A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.651