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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2e8h SAH Diphthine synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2e8h SAHDiphthine synthase / 1.089
2owg SAHDiphthine synthase / 1.082
2pb5 SAHDiphthine synthase / 1.079
2e8r SAHDiphthine synthase / 1.078
2eh5 SAHDiphthine synthase / 1.077
2p5f SAHDiphthine synthase / 1.077
2eh4 SAHDiphthine synthase / 1.076
2el3 SAHDiphthine synthase / 1.076
2pca SAHDiphthine synthase / 1.076
2pch SAHDiphthine synthase / 1.076
2ek4 SAHDiphthine synthase / 1.075
2eld SAHDiphthine synthase / 1.075
2emr SAHDiphthine synthase / 1.075
2en5 SAHDiphthine synthase / 1.075
2pcg SAHDiphthine synthase / 1.075
2ed5 SAHDiphthine synthase / 1.074
2eka SAHDiphthine synthase / 1.074
2e8s SAHDiphthine synthase / 1.073
2ek2 SAHDiphthine synthase / 1.060
2ek7 SAHDiphthine synthase / 1.060
2p9d SAHDiphthine synthase / 1.060
2pb6 SAHDiphthine synthase / 1.060
1wng SAHDiphthine synthase / 1.058
2huv SAHDiphthine synthase / 1.058
2p6l SAHDiphthine synthase / 1.058
2pcm SAHDiphthine synthase / 1.058
2e4n SAHDiphthine synthase / 1.057
2p6k SAHDiphthine synthase / 1.057
2egs SAHDiphthine synthase / 1.056
2eh2 SAHDiphthine synthase / 1.056
2ek3 SAHDiphthine synthase / 1.056
2ele SAHDiphthine synthase / 1.056
2dv3 SAHDiphthine synthase / 1.055
2dxx SAHDiphthine synthase / 1.055
2eeq SAHDiphthine synthase / 1.055
2el0 SAHDiphthine synthase / 1.054
2p6d SAHDiphthine synthase / 1.052
2pck SAHDiphthine synthase / 1.052
2ejk SAHDiphthine synthase / 1.051
2dek SAHDiphthine synthase / 1.045
2huq SAHDiphthine synthase / 1.045
1vce SAHDiphthine synthase / 1.043
2owu SAHDiphthine synthase / 1.043
2hut SAHDiphthine synthase / 1.040
2owk SAHDiphthine synthase / 1.040
2e08 SAHDiphthine synthase / 1.039
2p6i SAHDiphthine synthase / 1.039
2dxv SAHDiphthine synthase / 1.038
2e7r SAHDiphthine synthase / 1.038
2z6r SAHDiphthine synthase / 1.038
2e07 SAHDiphthine synthase / 1.037
2e16 SAHDiphthine synthase / 1.037
2egb SAHDiphthine synthase / 1.037
2ehl SAHDiphthine synthase / 1.037
2dxw SAHDiphthine synthase / 1.036
2dsg SAHDiphthine synthase / 1.035
2dv5 SAHDiphthine synthase / 1.035
2dv7 SAHDiphthine synthase / 1.035
2e15 SAHDiphthine synthase / 1.035
2egl SAHDiphthine synthase / 1.035
2dsh SAHDiphthine synthase / 1.034
2e17 SAHDiphthine synthase / 1.034
2p2x SAHDiphthine synthase / 1.034
2p5c SAHDiphthine synthase / 1.033
2ejj SAHDiphthine synthase / 1.027
2e8q SAHDiphthine synthase / 1.023
2owv SAHDiphthine synthase / 1.023
2pci SAHDiphthine synthase / 1.022
2pb4 SAHDiphthine synthase / 1.018
2eni SAHDiphthine synthase / 1.013
2dsi SAHDiphthine synthase / 1.005
2dv4 SAHDiphthine synthase / 1.002
2emu SAHDiphthine synthase / 0.997
2hux SAHDiphthine synthase / 0.979
2hr8 SAHDiphthine synthase / 0.893
2owf SAHDiphthine synthase / 0.788
2ejz SAHDiphthine synthase / 0.724
2ed3 SAHDiphthine synthase / 0.718
1s4d SAHUroporphyrinogen-III C-methyltransferase 2.1.1.107 0.699
2qbu SAHPrecorrin-2 methyltransferase / 0.694
2ha8 SAHProbable methyltransferase TARBP1 / 0.693
3hgm ATPTRAP-T-associated universal stress protein TeaD / 0.692
4x3l MTARNA 2'-O ribose methyltransferase / 0.692
3s3t ATPUniversal stress protein / 0.675
3nut SAHPrecorrin-3 methylase / 0.665
5a7y SAHtRNA (adenine(9)-N1)-methyltransferase 2.1.1.218 0.665
1cbf SAHCobalt-precorrin-4 C(11)-methyltransferase 2.1.1.271 0.660
4i3z ADPCyclin-dependent kinase 2 2.7.11.22 0.658
4oa9 ANPProtein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1 0.658
1kh3 ANPArgininosuccinate synthase / 0.657
1j21 ATPArgininosuccinate synthase / 0.656
2e0n SAHPrecorrin-2 C20-methyltransferase / 0.656
4rr7 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.656
4rr8 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.653
4jwf SAHtRNA (guanine(9)-N1)-methyltransferase / 0.651
4rri A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.650