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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2e40 LGC Beta-glucosidase 1A 3.2.1.21

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2e40 LGCBeta-glucosidase 1A 3.2.1.21 0.970
2j7c IDEBeta-glucosidase A 3.2.1.21 0.903
2j7d GI1Beta-glucosidase A 3.2.1.21 0.900
2wbg LGSBeta-glucosidase A 3.2.1.21 0.895
3zj6 VM2Raucaffricine-O-beta-D-glucosidase 3.2.1.125 0.818
3vil SA0Beta-glucosidase / 0.771
4f79 P53Putative phospho-beta-glucosidase / 0.751
2xwe AMFGlucosylceramidase 3.2.1.45 0.728
3zj7 C1KStrictosidine-O-beta-D-glucosidase 3.2.1.105 0.727
4azh LOGBeta-N-acetylhexosaminidase 3.2.1.52 0.715
2vrj NCWBeta-glucosidase A 3.2.1.21 0.712
3u57 DH8Raucaffricine-O-beta-D-glucosidase 3.2.1.125 0.710
2wcg MT5Glucosylceramidase 3.2.1.45 0.689
3gxf IFMGlucosylceramidase 3.2.1.45 0.659
1noi NTZGlycogen phosphorylase, muscle form 2.4.1.1 0.658
4el0 D1KGlycogen phosphorylase, muscle form 2.4.1.1 0.658
4x7v MIVMycinamicin III 3''-O-methyltransferase 2.1.1.237 0.657
4g1y 0VOVitamin D3 receptor A / 0.655
5ief NBVNeutral alpha-glucosidase AB 3.2.1.84 0.651