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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2e0n SAH Precorrin-2 C20-methyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2e0n SAHPrecorrin-2 C20-methyltransferase / 1.057
3ndc SAHPrecorrin-4 C(11)-methyltransferase 2.1.1.133 0.774
1s4d SAHUroporphyrinogen-III C-methyltransferase 2.1.1.107 0.769
2qbu SAHPrecorrin-2 methyltransferase / 0.766
1cbf SAHCobalt-precorrin-4 C(11)-methyltransferase 2.1.1.271 0.752
2ybo SAHMethyltransferase / 0.732
2bb3 SAHCobalamin biosynthesis precorrin-6Y methylase (CbiE) / 0.721
2zvb SAHPrecorrin-3 C17-methyltransferase / 0.720
3nut SAHPrecorrin-3 methylase / 0.720
1wng SAHDiphthine synthase / 0.718
2dv7 SAHDiphthine synthase / 0.718
2hut SAHDiphthine synthase / 0.718
2ek2 SAHDiphthine synthase / 0.717
2eni SAHDiphthine synthase / 0.717
1v9a SAHUncharacterized protein / 0.712
2huv SAHDiphthine synthase / 0.707
2dsh SAHDiphthine synthase / 0.706
2en5 SAHDiphthine synthase / 0.706
2ejj SAHDiphthine synthase / 0.705
2e7r SAHDiphthine synthase / 0.702
2ele SAHDiphthine synthase / 0.702
2dxw SAHDiphthine synthase / 0.701
2ek7 SAHDiphthine synthase / 0.701
2e16 SAHDiphthine synthase / 0.700
2owu SAHDiphthine synthase / 0.696
2zvc SAHPrecorrin-3 C17-methyltransferase / 0.696
2e15 SAHDiphthine synthase / 0.694
2dsg SAHDiphthine synthase / 0.693
2eh4 SAHDiphthine synthase / 0.691
2emr SAHDiphthine synthase / 0.690
2ek4 SAHDiphthine synthase / 0.689
2el3 SAHDiphthine synthase / 0.688
2pcm SAHDiphthine synthase / 0.688
2e08 SAHDiphthine synthase / 0.687
2dek SAHDiphthine synthase / 0.680
2dv5 SAHDiphthine synthase / 0.680
2p9d SAHDiphthine synthase / 0.679
3nd1 SAHPrecorrin-6A synthase (Deacetylating) / 0.679
2ehl SAHDiphthine synthase / 0.678
2ek3 SAHDiphthine synthase / 0.666
2npn SAMPutative cobalamin synthesis related protein / 0.665
2e8r SAHDiphthine synthase / 0.663
2emu SAHDiphthine synthase / 0.663
2p6i SAHDiphthine synthase / 0.663
2e17 SAHDiphthine synthase / 0.662
2hr8 SAHDiphthine synthase / 0.662
2eka SAHDiphthine synthase / 0.659
2pch SAHDiphthine synthase / 0.658
2p5f SAHDiphthine synthase / 0.657
2e8h SAHDiphthine synthase / 0.656
2eh5 SAHDiphthine synthase / 0.656
2owg SAHDiphthine synthase / 0.656
2pcg SAHDiphthine synthase / 0.656
2e8s SAHDiphthine synthase / 0.654
2e8q SAHDiphthine synthase / 0.653
2eeq SAHDiphthine synthase / 0.652
2egb SAHDiphthine synthase / 0.652
2ejk SAHDiphthine synthase / 0.652
2pca SAHDiphthine synthase / 0.652
2dv4 SAHDiphthine synthase / 0.651
2p5c SAHDiphthine synthase / 0.651
2p6l SAHDiphthine synthase / 0.651
2pb5 SAHDiphthine synthase / 0.651
2e07 SAHDiphthine synthase / 0.650
2eh2 SAHDiphthine synthase / 0.650
2el0 SAHDiphthine synthase / 0.650
3wo0 ADPAlanine--anticapsin ligase / 0.650