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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2dw0 GM6 Zinc metalloproteinase-disintegrin-like VAP2B 3.4.24

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2dw0 GM6Zinc metalloproteinase-disintegrin-like VAP2B 3.4.24 1.012
1rm8 BATMatrix metalloproteinase-16 3.4.24 0.818
2w13 WR2Snake venom metalloproteinase BaP1 3.4.24 0.813
2w14 WR2Snake venom metalloproteinase BaP1 3.4.24 0.811
1gkc NFHMatrix metalloproteinase-9 3.4.24.35 0.765
4dd8 BATDisintegrin and metalloproteinase domain-containing protein 8 3.4.24 0.760
2i47 INNDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.759
4pkw GM6Lethal factor 3.4.24.83 0.750
1mnc PLHNeutrophil collagenase 3.4.24.34 0.748
1jk3 BATMacrophage metalloelastase 3.4.24.65 0.745
4je7 BB2Peptide deformylase 1A, chloroplastic/mitochondrial 3.5.1.88 0.730
1biw S80Stromelysin-1 3.4.24.17 0.719
3hy7 097A disintegrin and metalloproteinase with thrombospondin motifs 5 3.4.24 0.719
2jih 097A disintegrin and metalloproteinase with thrombospondin motifs 1 3.4.24 0.715
4q4e BB2Aminopeptidase N 3.4.11.2 0.712
3kme INNDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.710
3kds NHXATP-dependent zinc metalloprotease FtsH / 0.696
3hyg 099A disintegrin and metalloproteinase with thrombospondin motifs 5 3.4.24 0.693
3l0t INNDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.691
4dpe NGHStromelysin-1 3.4.24.17 0.682
2woa 023Macrophage metalloelastase 3.4.24.65 0.677
1hv5 RXPStromelysin-3 3.4.24 0.655
3hy9 098A disintegrin and metalloproteinase with thrombospondin motifs 5 3.4.24 0.655