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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2du2 FMN Lactate oxidase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2du2 FMNLactate oxidase / 1.370
5ebu FMNLactate oxidase / 1.253
4rje FNRLactate oxidase / 1.095
2e77 FMNLactate oxidase / 1.087
2j6x FMNLactate oxidase / 1.072
4yl2 FMNLactate oxidase / 1.036
2nli FMNLactate oxidase / 1.027
2zfa FMNLactate oxidase / 0.933
1kbi FMNCytochrome b2, mitochondrial 1.1.2.3 0.866
1fcb FMNCytochrome b2, mitochondrial 1.1.2.3 0.860
1szf FMNCytochrome b2, mitochondrial 1.1.2.3 0.848
1gox FMNPeroxisomal (S)-2-hydroxy-acid oxidase 1.1.3.15 0.817
4rnw FMNNADPH dehydrogenase 1 1.6.99.1 0.808
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.803
1h63 FMNPentaerythritol tetranitrate reductase / 0.797
2abb FMNPentaerythritol tetranitrate reductase / 0.783
1z48 FMNNADPH dehydrogenase / 0.780
3hgr FMN12-oxophytodienoate reductase 1 1.3.1.42 0.774
3p74 FMNPentaerythritol tetranitrate reductase / 0.769
1ics FMN12-oxophytodienoate reductase 1 1.3.1.42 0.768
1z44 FMNNADPH dehydrogenase / 0.768
1q45 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.766
3l5l FMNXenobiotic reductase / 0.764
4e2d FMNDehydrogenase / 0.762
2hs8 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.759
3p82 FMNPentaerythritol tetranitrate reductase / 0.756
1oya FMNNADPH dehydrogenase 1 1.6.99.1 0.753
2gqa FMNNADH:flavin oxidoreductase Sye1 / 0.752
3p62 FMNPentaerythritol tetranitrate reductase / 0.750
4iql FMNEnoyl-(Acyl-carrier-protein) reductase II / 0.750
3n14 FMNXenobiotic reductase / 0.749
1h51 FMNPentaerythritol tetranitrate reductase / 0.740
1vyr FMNPentaerythritol tetranitrate reductase / 0.740
3gye FMNDihydroorotate dehydrogenase (fumarate) / 0.739
4ef9 FMNDihydroorotate dehydrogenase (fumarate) / 0.739
1h50 FMNPentaerythritol tetranitrate reductase / 0.737
2djx FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.736
3p8i FMNPentaerythritol tetranitrate reductase / 0.736
4bf9 FMNtRNA-dihydrouridine(16) synthase / 0.736
3hf3 FMNChromate reductase / 0.734
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.732
3f03 FMNPentaerythritol tetranitrate reductase / 0.730
3aty FMNProstaglandin F2a synthase / 0.725
4wzh FMNDihydroorotate dehydrogenase (fumarate) / 0.725
3p67 FMNPentaerythritol tetranitrate reductase / 0.724
4e2b FMNDehydrogenase / 0.724
1oyc FMNNADPH dehydrogenase 1 1.6.99.1 0.723
4utl FNRXenobiotic reductase / 0.722
1jub FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.721
4utm FNRXenobiotic reductase / 0.719
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.718
3p84 FMNPentaerythritol tetranitrate reductase / 0.718
1jue FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.717
3p8j FMNPentaerythritol tetranitrate reductase / 0.717
4m5p FMNNADPH dehydrogenase / 0.715
4qai FMNNADPH dehydrogenase / 0.710
4ef8 FMNDihydroorotate dehydrogenase (fumarate) / 0.708
4utk FNRXenobiotic reductase / 0.708
4yco FMNtRNA-dihydrouridine(16) synthase / 0.707
4ycp FMNtRNA-dihydrouridine(16) synthase / 0.707
3b04 OOPIsopentenyl-diphosphate delta-isomerase / 0.705
3l67 FMNXenobiotic reductase / 0.703
4uth FMNXenobiotic reductase / 0.700
4qnw FMNChanoclavine-I aldehyde reductase easA / 0.696
2fzm FADBifunctional protein PutA 1.5.5.2 0.693
1vji FMN12-oxophytodienoate reductase 1 1.3.1.42 0.692
3gka FMNN-ethylmaleimide reductase / 0.692
1kbj FMNCytochrome b2, mitochondrial 1.1.2.3 0.691
1szg FNSCytochrome b2, mitochondrial 1.1.2.3 0.691
1vhn FMNtRNA-dihydrouridine synthase / 0.690
1dor FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.688
2iid FADL-amino-acid oxidase 1.4.3.2 0.685
4rnv FMNNADPH dehydrogenase 1 1.6.99.1 0.685
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.684
1bwk FMNNADPH dehydrogenase 1 1.6.99.1 0.683
1z41 FMNNADPH dehydrogenase / 0.682
4jic FMNGTN Reductase / 0.681
4a3u FMNNADH:flavin oxidoreductase/NADH oxidase / 0.679
2bsl FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.678
1ea0 FMNGlutamate synthase [NADPH] large chain 1.4.1.13 0.677
4df2 FMNNADPH dehydrogenase / 0.677
2z6i FMN2-nitropropane dioxygenase / 0.676
2fjm 073Tyrosine-protein phosphatase non-receptor type 1 3.1.3.48 0.672
4i9u 1E7L-lactate dehydrogenase A chain 1.1.1.27 0.672
2djl FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.671
3hgs FMN12-oxophytodienoate reductase 3 1.3.1.42 0.669
3c3n FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.667
3giy FMN(S)-mandelate dehydrogenase 1.1.99.31 0.666
3fsu FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.665
3tjl FMNNADPH dehydrogenase / 0.663
1lvg 5GPGuanylate kinase 2.7.4.8 0.662
4udq FAD5-(hydroxymethyl)furfural oxidase / 0.662
4h6k FMNNADPH dehydrogenase 1 1.6.99.1 0.660
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.660
1ege FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.659
3kru FMNNADH:flavin oxidoreductase/NADH oxidase / 0.658
1u3d FADCryptochrome-1 / 0.655
4l82 FMNUncharacterized protein / 0.655
2gjn FMNNitronate monooxygenase 1.13.12.16 0.653
2vxa RBFDodecin / 0.653
1cc2 FADCholesterol oxidase 1.1.3.6 0.652
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.652
4yx6 FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.652
5fs6 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.652
4i6g FADCryptochrome-2 / 0.651
2igo FADPyranose 2-oxidase / 0.650
3gr8 FMNNADPH dehydrogenase / 0.650