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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2dte NAI Glucose 1-dehydrogenase related protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
2dte NAIGlucose 1-dehydrogenase related protein / 1.156
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.970
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.963
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.941
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.939
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.920
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.909
4b79 NADProbable short-chain dehydrogenase / 0.909
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.902
3p19 NDPPutative blue fluorescent protein / 0.891
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.888
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.886
3o26 NDPSalutaridine reductase / 0.885
1x7h NDPPutative ketoacyl reductase 1.3.1 0.882
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.870
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.865
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.865
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.863
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.861
4j7u NAPSepiapterin reductase 1.1.1.153 0.861
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.858
4dbz NDPPutative ketoacyl reductase 1.3.1 0.854
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.854
1x7g NAPPutative ketoacyl reductase 1.3.1 0.852
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.848
2wsb NADGalactitol dehydrogenase / 0.846
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.846
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.843
1u7t TDT3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.843
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.841
3wds NADNADH-dependent quinuclidinone reductase / 0.841
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.839
4kwh NAPReductase homolog / 0.839
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.837
3aut NAIGlucose 1-dehydrogenase 4 1.1.1.47 0.836
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.834
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.832
4yag NAIC alpha-dehydrogenase / 0.826
3ai2 NDPNADPH-sorbose reductase / 0.824
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.816
4yai NAIC alpha-dehydrogenase / 0.816
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.814
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.814
1oaa NAPSepiapterin reductase 1.1.1.153 0.812
1ipe NDPTropinone reductase 2 1.1.1.236 0.811
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.810
3qrw NDPPutative ketoacyl reductase 1.3.1 0.809
2wdz NADGalactitol dehydrogenase / 0.807
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.805
2c29 NAPDihydroflavonol 4-reductase / 0.803
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.802
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.801
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.801
3ak4 NADNADH-dependent quinuclidinone reductase / 0.801
1sny NAPLD36273p / 0.799
1w4z NAPPutative ketoacyl reductase 1.3.1 0.797
1zem NADXylitol dehydrogenase / 0.797
4j7x NAPSepiapterin reductase 1.1.1.153 0.797
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.794
3ai3 NDPNADPH-sorbose reductase / 0.793
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.791
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.790
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.789
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.789
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.788
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.788
4bmv NAPShort-chain dehydrogenase / 0.786
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.783
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.783
2jah NDPClavaldehyde dehydrogenase / 0.782
3aw9 NADNAD-dependent epimerase/dehydratase / 0.782
4fw8 NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.782
2bgm NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.780
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.780
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.779
3uce NDPDehydrogenase / 0.779
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.778
4hwk NAPSepiapterin reductase 1.1.1.153 0.778
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.777
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.777
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.776
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.775
1ae1 NAPTropinone reductase 1 / 0.774
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.774
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.771
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.770
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.770
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.769
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.768
1xkq NDPUncharacterized protein / 0.768
3tox NAPPutative oxidoreductase / 0.768
1pr9 NAPL-xylulose reductase 1.1.1.10 0.767
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.766
3g49 NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.766
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.763
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.762
4qec NAPElxO / 0.761
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.759
3d3w NAPL-xylulose reductase 1.1.1.10 0.759
4lis NADUDP-glucose 4-epimerase (Eurofung) / 0.759
4qed NAPElxO / 0.759
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.758
3tn7 NJPShort-chain alcohol dehydrogenase / 0.758
3icp NADNAD-dependent epimerase/dehydratase / 0.757
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.753
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.753
3h4v NAPPteridine reductase 1 1.5.1.33 0.753
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.747
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.747
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.746
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.744
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.744
2ag5 NAD3-hydroxybutyrate dehydrogenase type 2 / 0.743
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.743
3ko8 NADNAD-dependent epimerase/dehydratase / 0.742
3r3s NADPutative oxidoreductase / 0.741
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.741
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.740
3bmo NAPPteridine reductase / 0.738
3ehe NADUDP-glucose 4-epimerase (GalE-1) / 0.738
5d2e NAPMlnE / 0.738
3a9w NADNDP-sugar epimerase / 0.737
3geg NADShort-chain dehydrogenase/reductase SDR / 0.737
3sx2 NADUncharacterized protein / 0.736
2bd0 NAPSepiapterin reductase / 0.735
3tsc NADUncharacterized protein / 0.735
5jla NADPutative short-chain dehydrogenase/reductase / 0.734
2nv6 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.732
3sxp NADADP-L-glycero-D-mannoheptose-6-epimerase / 0.731
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.730
4hxy NDPPlm1 / 0.730
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.729
4wec NADShort chain dehydrogenase / 0.728
1b15 NAEAlcohol dehydrogenase 1.1.1.1 0.727
2aqh NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.727
2b69 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.725
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.724
1g1a NADdTDP-glucose 4,6-dehydratase / 0.723
2bfo NDPPteridine reductase 1 1.5.1.33 0.723
1b2l NDCAlcohol dehydrogenase 1.1.1.1 0.722
3sju NDPKeto reductase / 0.722
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.722
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 0.720
3s55 NADPutative short-chain dehydrogenase/reductase / 0.717
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.716
1i3l NADUDP-glucose 4-epimerase / 0.715
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.714
2yy7 NADL-threonine dehydrogenase / 0.713
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.713
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.712
1fdu NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.711
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.711
1n7h NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.710
2aqi NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.710
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.709
4clo NAPPteridine reductase / 0.709
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.709
4dre NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.708
1qyv NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.707
4nbw NADShort-chain dehydrogenase/reductase SDR / 0.707
3l77 NJPShort-chain alcohol dehydrogenase / 0.706
3ruh NADUDP-N-acetylglucosamine 4-epimerase / 0.706
2h9i EADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.702
4fn4 NADShort chain dehydrogenase / 0.702
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.701
1sby NADAlcohol dehydrogenase 1.1.1.1 0.700
2ntj P1HEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.700
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.699
2p5u NADUDP-glucose 4-epimerase / 0.699
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.699
2aq8 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.698
2b37 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.698
2ie0 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.698
4dqu NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.698
1n2s NAIdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.697
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.697
3wmx NADNAD dependent epimerase/dehydratase / 0.697
4eue NAITrans-2-enoyl-CoA reductase [NADH] / 0.696
4b8z NAPGDP-L-fucose synthase 1.1.1.271 0.695
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.693
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 0.693
4tqg NDPPutative dTDP-d-glucose 4 6-dehydratase / 0.693
5jyd NADShort chain dehydrogenase / 0.691
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.690
2aqk NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.689
2gn8 NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.689
4ej0 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.689
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.688
1fk8 NAD3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase 1.1.1.50 0.685
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.685
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.685
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.684
4dti NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.684
4lk3 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.683
1n7g NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.682
4idg NADPutative UDP-glucose 4-epimerase / 0.682
3ru7 NADUDP-N-acetylglucosamine 4-epimerase / 0.681
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.678
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.678
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.678
2pk3 A2RGDP-6-deoxy-D-mannose reductase / 0.677
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.677
4oxy NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.675
1bxk NADdTDP-glucose 4,6-dehydratase 2 / 0.674
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.674
2z1m NDPGDP-mannose 4,6-dehydratase / 0.672
3zu2 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.672
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.672
5b1y NDP3-oxoacyl-[acyl-carrier-protein] reductase / 0.672
1b16 NAQAlcohol dehydrogenase 1.1.1.1 0.671
3ajr NADNDP-sugar epimerase / 0.671
4bkq NAIEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.671
4egb NADdTDP-glucose 4,6-dehydratase / 0.671
4u7w NDPMxaA / 0.671
4o1m NADEnoyl-acyl carrier reductase / 0.670
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.669
3of2 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.669
4twr NADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase / 0.669
4xrg NADHomospermidine synthase 2.5.1.44 0.669
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.668
3mje NDPAmphB / 0.668
4hbg NDP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.668
2nq8 ZIDEnoyl-ACP reductase / 0.666
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.666
3oew NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.665
1b14 NADAlcohol dehydrogenase 1.1.1.1 0.662
3adp NAILambda-crystallin 1.1.1.45 0.662
3abi NADUncharacterized protein / 0.661
3ras NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.661
4bii NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.661
4gll NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.660
1t2a NDPGDP-mannose 4,6 dehydratase 4.2.1.47 0.659
2hsd NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.658
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.658
1i2b NADUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.657
3rue NADUDP-N-acetylglucosamine 4-epimerase / 0.657
2ntv P1HEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.656
4b8w NAPGDP-L-fucose synthase 1.1.1.271 0.653
4bqp NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.653
4plp NADHomospermidine synthase 2.5.1.44 0.653
4xq9 NADHomospermidine synthase 2.5.1.44 0.653
1p44 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.652
1p9b IMOAdenylosuccinate synthetase / 0.652
1wvg APRCDP-glucose 4,6-dehydratase 4.2.1.45 0.652
2ieb ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.652
4trn NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.652
5lc1 NADL-threonine 3-dehydrogenase / 0.652
2yw9 NAPEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.650
4imp NDPPolyketide synthase extender modules 3-4 / 0.650