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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2dsc APR ADP-sugar pyrophosphatase 3.6.1.13

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2dsc APRADP-sugar pyrophosphatase 3.6.1.13 1.245
3bm4 ADVADP-sugar pyrophosphatase 3.6.1.13 0.928
1khz ADVADP-ribose pyrophosphatase 3.6.1.13 0.843
2yvp RBYMutT/nudix family protein / 0.710
1mk1 APRMutT/nudix family protein / 0.693
1mqe APRMutT/nudix family protein / 0.691
1j7l ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.667
1mdl SMNMandelate racemase / 0.661
2d7d ADPUvrABC system protein B / 0.657
2hen ADPEphrin type-B receptor 2 2.7.10.1 0.655
2qo7 ANPEphrin type-A receptor 3 2.7.10.1 0.654
5czy SAMEukaryotic huntingtin interacting protein B / 0.652
4wud ANPDNA gyrase subunit B / 0.651